Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301A06f
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0361 + 17207657-17207701,17208850-17209773 30 0.77
02_01_0679 - 5048653-5051394 29 1.8
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 2.4
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396... 28 3.1
11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,653... 28 3.1
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165... 28 3.1
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115... 28 3.1
11_06_0760 + 27017956-27018433,27018487-27019234,27023760-270243... 27 4.1
04_01_0409 - 5409018-5410268 27 5.5
09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323... 27 7.2
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611... 26 9.5
04_04_1701 + 35470535-35471170,35471254-35471403,35471745-354720... 26 9.5
03_05_0113 + 20958580-20958703,20958768-20959507 26 9.5
>10_08_0361 + 17207657-17207701,17208850-17209773
Length = 322
Score = 29.9 bits (64), Expect = 0.77
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -3
Query: 361 LMYVRKHIEEFPKMSDIHNRNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNK 206
LMY + +E+ +S RN + H LV P +LH N G ++ L K
Sbjct: 129 LMYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETK 180
>02_01_0679 - 5048653-5051394
Length = 913
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 211 NKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLED 101
+KIP D+ +H + +KE L NK Y V D + D
Sbjct: 252 SKIPTDLDTMHHGKLNDELKEVLSNKKYLIVLDDVWD 288
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -3
Query: 292 NKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVND 113
N H + M+R H+I S L RL + + + LH+ + K + + NK+ +
Sbjct: 1022 NPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILHLAKKKLMLDQLFVNKS--ESQK 1079
Query: 112 YLEDCTKW 89
+ED +W
Sbjct: 1080 EVEDIIRW 1087
>12_01_0500 +
3966456-3968556,3968640-3969087,3969524-3969718,
3969891-3970119
Length = 990
Score = 27.9 bits (59), Expect = 3.1
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -3
Query: 283 KLVVPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLE 104
KL++ ++RL + F + +Y K P+DVQ H + + +C K K ND ++
Sbjct: 666 KLLLEVNRLLRPGGLFVWSATPVYRKTPEDVQIWH---DMAALTKSMCWKMVKKTNDTVD 722
Query: 103 D 101
+
Sbjct: 723 E 723
>11_01_0780 -
6531579-6531608,6531732-6532064,6533219-6533325,
6534267-6534316,6535110-6537065,6537458-6538209
Length = 1075
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 220 RLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTKWE 86
R +N++P D + I++H+ +K Y+ V D L + T W+
Sbjct: 224 RRHNRLPAD--RCTVQDLIDNIRDHIQDKRYFIVIDDLWETTSWD 266
>02_01_0252 -
1657268-1657692,1657727-1658445,1658761-1659089,
1659223-1659375,1659430-1659561,1659748-1659852,
1660020-1660193,1660283-1660352,1660458-1660639,
1660738-1660847,1660948-1661052,1661153-1661231,
1662128-1662168,1662283-1662358,1662455-1662589
Length = 944
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 204 ILLYRRTDKHPNEFRILCNLLIGTTSLCLFLVFLLCMSDILGNSSIC 344
++L R+T + R C + SL + FL+ +S ++ SIC
Sbjct: 252 LVLSRKTPRSDKSIRAACRYFLIECSLAFIVAFLINVSVVVVAGSIC 298
>01_06_1097 +
34507376-34507395,34509380-34511214,34511263-34511598,
34511800-34513691
Length = 1360
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -3
Query: 394 LXMPSQYIFENLMYVRKHIEEFPKMSDIHNRNTRNKHKLVV 272
+ PS++ E+L + + + P+ + N N + KH+ V+
Sbjct: 816 MEFPSEFCNESLPVISRDLHPIPEERVVENFNVQEKHEAVI 856
>11_06_0760 +
27017956-27018433,27018487-27019234,27023760-27024378,
27030755-27032440
Length = 1176
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 229 LSVRLYNKIPQ-DVQNLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTKWE 86
++++ NK + ++Q + K ++EHL K Y+ + D + T WE
Sbjct: 376 INIQTMNKPGEKNIQTMKRDGLSKLLQEHLNQKRYFLLIDDVWSATTWE 424
>04_01_0409 - 5409018-5410268
Length = 416
Score = 27.1 bits (57), Expect = 5.5
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = -3
Query: 334 EFPKMSDIHNRNTRNKHKLVV----PMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIHRF 167
E P+ +DIHN R HK + P S L IR + + KI I ++
Sbjct: 96 EKPRTNDIHNPTLRLMHKWIAITLFPRSNLRPIRGDELIIMFAMVRKIKISPVKCMIRQW 155
Query: 166 KKTIK 152
++IK
Sbjct: 156 LESIK 160
>09_03_0125 -
12531409-12531442,12531577-12531668,12531747-12532337,
12532454-12532789,12532899-12533156,12533867-12533971,
12534625-12534702,12535464-12535542,12535649-12535723,
12535828-12535946,12536042-12537106
Length = 943
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 249 ILCNLLIGTTSLCLFLVFLLCMSDI--LGNSSIC 344
ILC L GTT+LC LV + + + N ++C
Sbjct: 651 ILCTLSFGTTNLCGSLVSIYSCGSVSTIVNDTVC 684
>05_05_0036 -
21758409-21758531,21758891-21759206,21759964-21761121,
21761236-21761333
Length = 564
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 163 KTIKEHLCNKAYYKVNDYLEDCTK 92
KT +EH N YY + Y+ C K
Sbjct: 377 KTTQEHCPNLQYYYLGYYIHSCNK 400
>04_04_1701 +
35470535-35471170,35471254-35471403,35471745-35472015,
35472152-35472262,35472476-35472650,35472748-35473020,
35473251-35473494,35473623-35473708,35473752-35473968
Length = 720
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -3
Query: 283 KLVVPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVND 113
KL++ + RL + F + +Y K+P+DV+ I T+ +C + KV D
Sbjct: 355 KLLLELDRLLRPGGYFVWSATPVYQKLPEDVE---IWEAMSTLTRSMCWEMVNKVKD 408
>03_05_0113 + 20958580-20958703,20958768-20959507
Length = 287
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -3
Query: 328 PKMSDIHNRNTRNKHKLVV----PMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIHRFKK 161
P+ +DIHN R HK + P+S L IR + + KI I ++ +
Sbjct: 65 PRTNDIHNPTLRLMHKWIAMTLFPISDLRPIRRDELIIMFTMVRKIKISPVKCMIRQWLE 124
Query: 160 TIK 152
+IK
Sbjct: 125 SIK 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,676,129
Number of Sequences: 37544
Number of extensions: 185480
Number of successful extensions: 476
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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