Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A06f
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22940.1 68417.m03312 protein kinase family protein contains ...    30   0.49 
At1g03740.1 68414.m00354 protein kinase family protein contains ...    29   1.1  
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR...    27   3.5  
At1g06750.1 68414.m00717 hypothetical protein                          27   3.5  
At3g12630.1 68416.m01572 zinc finger (AN1-like) family protein c...    27   4.6  
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...    27   6.1  
At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...    27   6.1  
At5g50990.1 68418.m06322 pentatricopeptide (PPR) repeat-containi...    26   8.0  
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro...    26   8.0  
At4g23260.1 68417.m03353 protein kinase family protein contains ...    26   8.0  
At3g12145.1 68416.m01513 polygalacturonase inhibitor, putative /...    26   8.0  
At1g47670.1 68414.m05296 amino acid transporter family protein s...    26   8.0  

>At4g22940.1 68417.m03312 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 458

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 204 ILLYRRTDKHPNEFRILCNLLIGTTSLCLFLVFLLCMSDILGNSSI 341
           I++ R+ D HPN  ++   +L+   S  L+L+F     D+LG SS+
Sbjct: 151 IIILRKLD-HPNVIKLEGLMLVDHDSSTLYLIFEYMEHDLLGLSSL 195


>At1g03740.1 68414.m00354 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 542

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +3

Query: 204 ILLYRRTDKHPNEFRILCNLLIGTTSLCLFLVFLLCMSDILGNSSI 341
           I++ RR D HPN  + L  L+    S  L+LVF     D+LG SS+
Sbjct: 261 IIVMRRLD-HPNVLK-LEGLITAPVSSSLYLVFEYMDHDLLGLSSL 304


>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 897

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 225 LCACTTKSHKMFRTYIYIGLRKLLKNICAIKLTIKSM 115
           L  C+ ++ K F T++ +GLRKL  + C I+    S+
Sbjct: 744 LYICSNRNLKTFSTHLPMGLRKLDLSNCGIEWVTDSI 780


>At1g06750.1 68414.m00717 hypothetical protein
          Length = 495

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 64  NSRSEQLIPTLCNLLDNH*LYSKLYCTDVL 153
           + R  +  PT C+L+DN    ++LYCT+ L
Sbjct: 377 HKRFAEAFPTYCSLVDN----ARLYCTNAL 402


>At3g12630.1 68416.m01572 zinc finger (AN1-like) family protein
           contains Pfam domain, PF01428: AN1-like Zinc finger
          Length = 160

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 216 RRTDKHPNEFRILCNLLIGTTSLC 287
           +RT+K   EF++L  L   TT+LC
Sbjct: 3   QRTEKEETEFKVLETLTTTTTTLC 26


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -3

Query: 274 VPMSRLHKIRNSFGCLSV---RLYNKIPQDVQ 188
           V M   HK+RN F C  V   +L++ +P+DV+
Sbjct: 56  VGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVK 87


>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -3

Query: 274 VPMSRLHKIRNSFGCLSV---RLYNKIPQDVQ 188
           V M   HK+RN F C  V   +L++ +P+DV+
Sbjct: 56  VGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVK 87


>At5g50990.1 68418.m06322 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 511

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 178 IHRFKKTIKEHLCNKAYYKVNDYLEDCTK 92
           IHRFK     H+  KA YKV + L   TK
Sbjct: 388 IHRFKAGDTSHIETKAIYKVLEGLIQKTK 416


>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
           protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
           contains Zinc finger C-x8-C-x5-C-x3-H type domain
           (PF00642); identical to zfwd3 protein (GP:12057168)
           {Arabidopsis thaliana}
          Length = 472

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 327 LRCRTYIIEILGTNTSLLCR*VGYIRYEIHSGVCLCACT-TKSHKMFRT 184
           L+CR  + + +GT TSLLC     I   +   + L AC+  +S K+ +T
Sbjct: 342 LQCRMTLKQHIGTVTSLLCWDKCLISSSLDGTIKLWACSENESLKVVQT 390


>At4g23260.1 68417.m03353 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 579

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 379 QYIFENLMYVRKHIEEFPKMSDIHNRNTRNKHKLVVPMSRLHKIRNSFG 233
           +YI   L+ V+++  + P MS IH   T +   L VP+      RN  G
Sbjct: 505 RYIHIGLLCVQENPADRPTMSTIHQMLTNSSITLPVPLPPGFFFRNGPG 553


>At3g12145.1 68416.m01513 polygalacturonase inhibitor, putative /
           leucine-rich repeat protein (FLR1) similar to
           Swiss-Prot:Q05091 polygalacturonase inhibitor precursor
           (Polygalacturonase-inhibiting protein) [Pyrus communis];
           identical to leucine-rich repeat protein FLR1 (FLR1)
           cDNA NCBI_gi:7637422; contains Pfam domain  PF00560
           Leucine Rich Repeat
          Length = 164

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 217 LYNKIPQDVQNLHIHRFKKTIKEHLCNK 134
           +Y KIP  +  LH+  F  +   HLC K
Sbjct: 109 IYGKIPPALTKLHLEHFNVS-DNHLCGK 135


>At1g47670.1 68414.m05296 amino acid transporter family protein
           similar to lysine and histidine specific transporter
           GI:2576361 from [Arabidopsis thaliana]; contains Pfam
           profile PF01490: Transmembrane amino acid transporter
           protein
          Length = 519

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 276 TSLCLFLVFLLCMSDILGNSSICLRTYIKFSKMYW 380
           TSLC+ L  L  ++ I G S I   T I +S M W
Sbjct: 229 TSLCIVLSQLPNLNSIAGLSLIGAVTAITYSTMVW 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,221,109
Number of Sequences: 28952
Number of extensions: 163356
Number of successful extensions: 387
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)