Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A04f
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6852| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.0  
SB_24685| Best HMM Match : 7tm_1 (HMM E-Value=7.4e-06)                 27   5.2  
SB_10823| Best HMM Match : 7tm_1 (HMM E-Value=6e-22)                   27   5.2  
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)          26   9.2  
SB_1910| Best HMM Match : 7tm_1 (HMM E-Value=0.0013)                   26   9.2  

>SB_6852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -2

Query: 255 HPKCYFYYKFNFSLSSIIITVHYTKKYDQKKLFFCCSIDKIASASRSN 112
           H KCY +Y  N    S+ +   ++ K   ++L   C+  ++    +SN
Sbjct: 15  HKKCYQHYNSNHETCSVALRPSFSCKRAPRRLRTSCAGGQVFDFDKSN 62


>SB_24685| Best HMM Match : 7tm_1 (HMM E-Value=7.4e-06)
          Length = 311

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -2

Query: 204 IITVHYTKKYDQKKLFFCCSIDKIASASRSNDTSVNPVITYSHVVI*RLPSHHPPLLT 31
           + TV+  +K    K  FCC + +   A R    +V      + V +  + S H  LLT
Sbjct: 201 VYTVNAREKRRTVKFCFCCDVPEFEMAPRPRCATVTEESQITTVPMTSMSSSHRSLLT 258


>SB_10823| Best HMM Match : 7tm_1 (HMM E-Value=6e-22)
          Length = 451

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -2

Query: 204 IITVHYTKKYDQKKLFFCCSIDKIASASRSNDTSVNPVITYSHVVI*RLPSHHPPLLT 31
           + TV+  +K    K  FCC + +   A R    +V      + V +  + S H  LLT
Sbjct: 370 VYTVNAREKRRTVKFCFCCDVPEFEMAPRPRCATVTEESQITTVPMTSMSSSHRSLLT 427


>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
          Length = 592

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -2

Query: 243 YFYYK---FNFSLSSIIITVHYTKKY 175
           Y+YY    F  SL SIIIT+  TK++
Sbjct: 21  YYYYASAIFIMSLGSIIITIRQTKQH 46


>SB_1910| Best HMM Match : 7tm_1 (HMM E-Value=0.0013)
          Length = 550

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 101 TEVSLDREAEAILSMEQQKKSFFWSYFFV*CTVIII 208
           TE ++ RE EAI S E ++ + FW   F  C+ I I
Sbjct: 480 TEAAM-REFEAIDSTEVREMNTFWGDMFRRCSTIAI 514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,431,130
Number of Sequences: 59808
Number of extensions: 175163
Number of successful extensions: 385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)