Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A04f
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical ...    31   0.21 
AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical ...    30   0.49 

>AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical
           protein K08D9.2 protein.
          Length = 463

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 210 SIIITVHYTKKYDQKKLFFCCSIDKIASASRSNDTSVNPVIT 85
           SIIIT  + +KYD   L++ C   +IA++S    T+   V+T
Sbjct: 105 SIIITKQHIEKYDVTCLYYDCKRREIANSSFPTQTAPMSVVT 146


>AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical
           protein T11F8.1 protein.
          Length = 261

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -3

Query: 383 FFQWQHFRLXLFRVYYRYIQTFTC*YF 303
           F+Q+ H ++ + + +Y++IQ F C +F
Sbjct: 230 FWQFLHLKIKISKTFYKFIQFFKCFFF 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,051,001
Number of Sequences: 27780
Number of extensions: 144354
Number of successful extensions: 294
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)