Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301A03f
(314 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 95 2e-21
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 31 0.054
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 29 0.13
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 28 0.38
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 28 0.38
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 0.51
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 0.67
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 0.67
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 1.5
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 1.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 1.5
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 1.5
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 25 2.0
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 2.0
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 25 2.0
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 25 2.7
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 25 3.6
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 24 4.7
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 24 4.7
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 24 4.7
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 24 6.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 24 6.3
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 24 6.3
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 24 6.3
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 24 6.3
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 23 8.3
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 23 8.3
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 23 8.3
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 23 8.3
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 23 8.3
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 95.5 bits (227), Expect = 2e-21
Identities = 43/80 (53%), Positives = 58/80 (72%)
Frame = +2
Query: 53 DGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVN 232
+G + + +E+L DE+ SRTRLL+N+IK+MKSE R++HE +KIKEN EKI N
Sbjct: 22 EGLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNN 81
Query: 233 KTLPYLVSNVIELLDVDPQE 292
K LPYLV NV+E+LD+ P E
Sbjct: 82 KMLPYLVGNVVEILDMQPDE 101
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 30.7 bits (66), Expect = 0.054
Identities = 16/71 (22%), Positives = 37/71 (52%)
Frame = +2
Query: 65 ALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLP 244
ALS+ + +PT+ +LL ++M ++ +++ D + E +K +++ LP
Sbjct: 406 ALSQIAVEIPTEVSKHHAQLLPLVFELMSTQGVKVGKSACNCIDALLEGLDKSEISGYLP 465
Query: 245 YLVSNVIELLD 277
L+ ++ LL+
Sbjct: 466 MLMERLVGLLE 476
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 29.5 bits (63), Expect = 0.13
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +2
Query: 32 EDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKEN 211
+DK+ E E +S + + E +++ + NE+K+ K + + ++ N KE+
Sbjct: 824 QDKNQIETLNERISAAADELSSMESINKNQA--NELKLAKQKCSNLQEKINFGNKLAKEH 881
Query: 212 TEKI 223
TEKI
Sbjct: 882 TEKI 885
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 27.9 bits (59), Expect = 0.38
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 44 IWEDGEEALSEEVLRMPTDEIVSRTRLLDN 133
++ DGE+ L E+ ++PT+ I S T DN
Sbjct: 324 LFVDGEKGLRSELSQIPTENIDSTTDRFDN 353
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.9 bits (59), Expect = 0.38
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +2
Query: 122 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 301
L+D +IM++E R + ++ + I + + N +LP+ I+L+D + E
Sbjct: 1114 LIDGHSEIMENERRRPKYRIRLSGNPILGDGKSDNQNMSLPFYRGEYIQLIDANQDNYLE 1173
Query: 302 D 304
+
Sbjct: 1174 E 1174
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 0.51
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +2
Query: 35 DKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENT 214
DKS ++ E+ L + R+ ++ V +R+ + K SE+ LQ QN+ K++
Sbjct: 139 DKSFRKNMEDEL--RITRLASENNVLISRI--DRTKRHFSELFTQKQMLQLQNENFKDDY 194
Query: 215 EKIK-VNKTL 241
EKIK NK L
Sbjct: 195 EKIKEENKRL 204
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.1 bits (57), Expect = 0.67
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 128 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELL---DVDPQEEE 298
DN++ +++ +M + + N+K+ E + +KTL ++ S ++ L DV EE
Sbjct: 700 DNDMASLEAPMMSHNTDTDTLNNKLNEKDNVVFEDKTLQHVASEIVPNLPPADVGELNEE 759
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 0.67
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 140 KIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVI 265
+++ +E+ R+S L Q ++ +TEK ++N L SNV+
Sbjct: 1128 EMLNAELQRVSQSLPPQMSRVVHDTEK-RLNMLFDRLNSNVL 1168
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 1.5
Identities = 11/61 (18%), Positives = 29/61 (47%)
Frame = +2
Query: 122 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 301
L+D IM++ R + ++ + I + + N ++PY+ ++++D + E
Sbjct: 932 LIDGHCPIMENGKRRPKYRIRLSGNPILGDGKSDNQNMSIPYIRGEYVQMIDANQDNYLE 991
Query: 302 D 304
+
Sbjct: 992 E 992
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 1.5
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 128 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEED 304
DNE K MK E + + Q + ++ + ++K+K K ++ + EEEED
Sbjct: 89 DNEAKKMKREKEILRQQRQKRKSELTQLSQKVK-EKFKKMRKKPARRIVTIANDEEEED 146
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.8 bits (54), Expect = 1.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 92 PTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKE 208
P+ EI S+ DNE ++ + + IS+E +ND +E
Sbjct: 61 PSVEIRSKLVSPDNEANLLSDQNITISNENNNENDTTEE 99
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.8 bits (54), Expect = 1.5
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +2
Query: 14 TMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMR---ISHELQ 184
T+ L+D +IW D S R+ + R + ++ +++ + I + +Q
Sbjct: 300 TVGLMLQDNAIWSDYPRVWSAFCGRLNDKSVACRIKCIEVASNALQNSLATSEIIENVVQ 359
Query: 185 AQNDKIKENTEKIKV 229
K+ + EK++V
Sbjct: 360 MLQSKLADTDEKVRV 374
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 2.0
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -2
Query: 151 LHYFDFIVQKSGSTYDFISWHAK---NFLTESFLAILPN*LV 35
L + D ++K G+T FI WH N S +I+ N ++
Sbjct: 39 LRHVDIEMKKQGNTIKFIVWHGSRKHNACIRSVYSIINNMII 80
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 2.0
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 53 DGEEALSEEVLRMPTDEI--VSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIK 226
D + L +L+ +DE+ ++ T L+DN ++ ++ +S + + I E++
Sbjct: 307 DSKGNLDVSLLKSLSDEVNMITTTSLVDNTMEKTDADAASLSSDSDGEEGHIVHALEEMA 366
Query: 227 VNKTLPYL 250
++ PY+
Sbjct: 367 YDEENPYV 374
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 2.0
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 47 WEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQN 193
W++G + +E++ D +V + + + +KSEV ++ E+ QN
Sbjct: 141 WKNGLDKNNEKITPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQN 189
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 2.7
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 29 LEDKSIWEDG---EEALSEEVLRMPTDEIVSRTRLLDNEIKI 145
+ DK WE+ +E + R+PTD+ +++ N +K+
Sbjct: 462 VHDKKSWEEMNAIQEYFQRPITRVPTDDYEELEKVVKNALKM 503
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 24.6 bits (51), Expect = 3.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 215 EKIKVNKTLPYLVSNVIELLDVDPQEEEED 304
+++ + TLPY V E+L + QEE+ D
Sbjct: 346 DRMLIISTLPYSHEEVKEILKIRCQEEDVD 375
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 24.2 bits (50), Expect = 4.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 38 KSIWEDGEEALSEEVLRMPTDEIVSRT 118
K+I D E L+EEVL TD+ V+ T
Sbjct: 285 KNILNDDELHLTEEVLSFLTDDPVTLT 311
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 24.2 bits (50), Expect = 4.7
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 164 RISHELQAQNDKIK-ENTEKIKVNKTLPYLVSNVIELLD--VDPQEEEEDGA 310
R+S E A ++ + E+ + N+TL L N++E+ D DP ++ D +
Sbjct: 579 RVSDEHSASSNFNEIESQASFEQNQTLDILSENIVEIQDKSTDPLQKSLDSS 630
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 24.2 bits (50), Expect = 4.7
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +2
Query: 131 NEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSN 259
N+ ++ + V + + I +NTE ++NK++ Y + N
Sbjct: 185 NQDQVDNTHVQNSTDGVNQDTGMILDNTEDKEINKSMSYSMKN 227
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 23.8 bits (49), Expect = 6.3
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 65 ALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKI 223
++ E R PTD + RTRL + + V ++H ++ + T+K+
Sbjct: 571 SIKYEYTRTPTDFLARRTRLAFLDARQALQAVAGVTHVMKEEFGWDDATTDKL 623
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 23.8 bits (49), Expect = 6.3
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +2
Query: 29 LEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKE 208
LEDK E + L + + + ++ + + + E K+ S +E+Q QN +K
Sbjct: 272 LEDKFNSEAARQLLQKSLSIVASNLKQAENKTISYEEKL--SIAQNSINEIQTQNRDLKL 329
Query: 209 NTEKIK 226
TEK++
Sbjct: 330 ETEKLQ 335
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 23.8 bits (49), Expect = 6.3
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 29 LEDKSIWEDGEEALSEEVLR 88
+ED++I +DGE A++E+ R
Sbjct: 152 IEDENIIDDGETAINEQKKR 171
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 23.8 bits (49), Expect = 6.3
Identities = 15/79 (18%), Positives = 31/79 (39%)
Frame = +2
Query: 2 NHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHEL 181
+H++ +DK + DG +E + S+ R++ N+ +V+
Sbjct: 71 SHSLPSIVHEDDKLVGSDGVSTTPDEYFEQQSTRSRSKPRIISNKETTTSKDVVHPVKTE 130
Query: 182 QAQNDKIKENTEKIKVNKT 238
ND + K V++T
Sbjct: 131 NFANDLDTTSDSKPVVHQT 149
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 23.8 bits (49), Expect = 6.3
Identities = 22/78 (28%), Positives = 32/78 (41%)
Frame = +2
Query: 26 TLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIK 205
T E E +L EEV R PTD+ + D + + K+E + I Q ++IK
Sbjct: 702 TAEKPFTTEKPLSSLPEEVSRQPTDDKGEQVSNADVDSGLSKTERLTIQ-----QTNEIK 756
Query: 206 ENTEKIKVNKTLPYLVSN 259
+ LP SN
Sbjct: 757 HVPTNTTSSVKLPQQPSN 774
>SPAC869.06c |||cation binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 23.4 bits (48), Expect = 8.3
Identities = 25/94 (26%), Positives = 43/94 (45%)
Frame = +2
Query: 20 ATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDK 199
AT +++ +WE ++ EE++ P E + L E K M +E R H+L +
Sbjct: 53 ATRWQNQFVWELARHSVGEEIVVYPKFE-----KYLGEEGKEM-AEKDRHEHQL-VKEML 105
Query: 200 IKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 301
K + K + +P L ++E L EEE+
Sbjct: 106 YKFQSMKANQSNFIPAL-DELMESLQKHIDEEEQ 138
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 98 DEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPY 247
D+ S R D + ++ ++ +SHE ++ + + ++ + +K N T PY
Sbjct: 305 DDSTSIIRGFDPRLPVLSTK--NVSHEEKSHSVQDDKSKQLLKPNPTQPY 352
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 23.4 bits (48), Expect = 8.3
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Frame = +2
Query: 113 RTRLLDNEIKIMK--SEVMRISHELQAQ----NDKIKENTEKIKVNKTLPYLVSNVIELL 274
+T++ N + + + SE +R +EL+ + +I E ++++ +NK + + S I++L
Sbjct: 390 KTKVSRNVVSVDRHVSEYVRTIYELRQKVSILQKRIAEESKQLALNKEVRKISSREIKML 449
Query: 275 D 277
D
Sbjct: 450 D 450
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 23.4 bits (48), Expect = 8.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 151 LHYFDFIVQKSGSTYDFISWH 89
L D ++K G+T FI WH
Sbjct: 39 LRRVDIELKKQGNTIKFIVWH 59
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 23.4 bits (48), Expect = 8.3
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 158 VMRISHELQAQNDKIKENTEKIKVN-KTLPYLVSNVIELLDVDPQEEEE 301
V ++ +L +KEN+EK K N ++L V N+ + + E +E
Sbjct: 346 VEELTKQLHVAESTLKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDE 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,758
Number of Sequences: 5004
Number of extensions: 16285
Number of successful extensions: 98
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -