Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A03f
         (314 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    25   0.16 
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    25   0.16 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    25   0.16 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    24   0.38 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   0.50 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   2.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   4.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   4.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   4.7  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
 Frame = +2

Query: 59  EEALSEEVLRMPTDEIVSRTRLLDNEIKIMK---------SEVMRISHELQAQNDKIKEN 211
           +E+ + +   +  DEI+   RLL+N  K +          +E+ R+  +  A + K   +
Sbjct: 22  DESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDALATDCKKCTD 81

Query: 212 TEKIKVNKTLPYLVSNVIELLD 277
            ++  + K + +LV N  EL D
Sbjct: 82  KQREVIKKVIKFLVENKPELWD 103


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
 Frame = +2

Query: 59  EEALSEEVLRMPTDEIVSRTRLLDNEIKIMK---------SEVMRISHELQAQNDKIKEN 211
           +E+ + +   +  DEI+   RLL+N  K +          +E+ R+  +  A + K   +
Sbjct: 22  DESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDALATDCKKCTD 81

Query: 212 TEKIKVNKTLPYLVSNVIELLD 277
            ++  + K + +LV N  EL D
Sbjct: 82  KQREVIKKVIKFLVENKPELWD 103


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
 Frame = +2

Query: 59  EEALSEEVLRMPTDEIVSRTRLLDNEIKIMK---------SEVMRISHELQAQNDKIKEN 211
           +E+ + +   +  DEI+   RLL+N  K +          +E+ R+  +  A + K   +
Sbjct: 22  DESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDALATDCKKCTD 81

Query: 212 TEKIKVNKTLPYLVSNVIELLD 277
            ++  + K + +LV N  EL D
Sbjct: 82  KQREVIKKVIKFLVENKPELWD 103


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 24.2 bits (50), Expect = 0.38
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 107 VSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDP 286
           V + + L  E+K    +++ +  +L  QND +K      K    +  L++N    +DV  
Sbjct: 41  VDKMKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTL 100

Query: 287 QEEE 298
           Q +E
Sbjct: 101 QNDE 104


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 0.50
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 158 VMRISHELQAQNDKIKENTEKIKVNKTLPYLVSN 259
           + R + E+ AQND+  +    +K+ + LP+ V +
Sbjct: 334 LQRQNLEMVAQNDRTLQMIAGMKIKEELPHFVGS 367


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 17  MATTLEDKSIWEDGEEALSEEVLRMPT 97
           M T L +  IWE  +    +E+  +PT
Sbjct: 234 MKTLLSETDIWEVEQILAKKEIKGVPT 260


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 145 YFDFIVQKSGSTYDFISW 92
           Y D I + SG+T   I W
Sbjct: 371 YLDVIERNSGATDKIIRW 388


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 145 YFDFIVQKSGSTYDFISW 92
           Y D I + SG+T   I W
Sbjct: 371 YLDVIERNSGATDKIIRW 388


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 145 YFDFIVQKSGSTYDFISW 92
           Y D I + SG+T   I W
Sbjct: 371 YLDVIERNSGATDKIIRW 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,828
Number of Sequences: 438
Number of extensions: 988
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)