Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1055.Seq
         (489 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   3.4  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   4.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   4.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.9  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 192 KITRXQRTEDERLNKT 239
           K  + + TEDE LNKT
Sbjct: 267 KTIKEKYTEDEELNKT 282


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = -2

Query: 131 WLRRRRGCPSPVSCPNRRCCRT 66
           WL    G P P + P   C  T
Sbjct: 37  WLAAASGAPHPAALPIEGCNET 58


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = -2

Query: 131 WLRRRRGCPSPVSCPNRRCCRT 66
           WL    G P P + P   C  T
Sbjct: 37  WLAAASGAPHPAALPIEGCNET 58


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -2

Query: 125 RRRRGCPSPVSCPNRRCCRTWHRQRKLRPRY 33
           RRR   P  V+ P   C R         PRY
Sbjct: 41  RRRAARPGVVTTPRWGCARASSATTMGGPRY 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,062
Number of Sequences: 336
Number of extensions: 1816
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)