Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1055.Seq
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31...    29   2.0  
10_01_0116 + 1443703-1444112,1444789-1444867,1444928-1444948           28   4.6  
03_05_0799 + 27809301-27811550                                         27   6.1  
12_02_0544 - 20179129-20179336,20179443-20179594,20179706-201798...    27   8.1  

>04_01_0021 +
           311914-312399,314218-314310,314391-314672,314754-314826,
           315273-315405,315476-315629,315763-315843,316174-316296,
           316629-316787,316862-316996,317159-317254,317416-317910,
           318651-318722,319496-319537
          Length = 807

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 149 WQPSWHWLRRRRGCPSPVSCPNRRCCRTWHRQRKLRPR 36
           W+ S     RRR   S   C +   CR  H + +LRPR
Sbjct: 52  WKTSLCSFFRRRAASSADGCSHGDSCRYAHSEEELRPR 89


>10_01_0116 + 1443703-1444112,1444789-1444867,1444928-1444948
          Length = 169

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 221 VLSALXPRDFDSWRLSSRSYRLFCWQPSWH 132
           +L A  P     W +S+  Y   CW   WH
Sbjct: 106 ILLAPSPLHHQRWMISAHIYSEICWALHWH 135


>03_05_0799 + 27809301-27811550
          Length = 749

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 152 CW-QPSWHWLRRRRGCPSPVSCPNRRCCRTWHRQRKLRPRYRTLSS 18
           CW  P+ +   R R C    SC NRR C   H   +LRP Y +  S
Sbjct: 335 CWLHPAQY---RTRLCKDGTSC-NRRVCFFAHTTDELRPLYVSTGS 376


>12_02_0544 -
           20179129-20179336,20179443-20179594,20179706-20179864,
           20179989-20180232,20180719-20180835,20181730-20181905
          Length = 351

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 296 VYKKFKRRFVIALKCIRYRRFVQPFVLSALXPRDFDSWRL 177
           V K++  + ++ L    +   VQ FV++ +  RDF  W+L
Sbjct: 182 VQKEYPDKMIVTLTQCLFST-VQSFVVAVVAERDFSKWKL 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,977,292
Number of Sequences: 37544
Number of extensions: 185687
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)