Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1055.Seq
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41)                    44   5e-05
SB_48117| Best HMM Match : LANC_like (HMM E-Value=2.3)                 42   4e-04
SB_22205| Best HMM Match : DUF805 (HMM E-Value=7.7)                    42   4e-04
SB_12292| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.055
SB_7041| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.055
SB_42521| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_40992| Best HMM Match : DUF1531 (HMM E-Value=5.7)                   32   0.29 
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)            30   0.89 
SB_29796| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)                 30   0.89 
SB_32244| Best HMM Match : DUF1301 (HMM E-Value=5.1)                   29   1.6  
SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)                 29   1.6  
SB_1374| Best HMM Match : PAN (HMM E-Value=0.013)                      29   2.1  
SB_48712| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_24983| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41)
          Length = 366

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +2

Query: 14  QWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           +WR VFYI G +Y   A FY +F SG +Q W
Sbjct: 313 EWRIVFYIGGAIYAAGAVFYAVFASGEKQTW 343


>SB_48117| Best HMM Match : LANC_like (HMM E-Value=2.3)
          Length = 440

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 2   PTQAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           PT+ QW+KV+YI  G+YV  A  +   G+ + Q W
Sbjct: 351 PTRDQWQKVYYIGAGIYVFGAVAFAALGTSKEQPW 385


>SB_22205| Best HMM Match : DUF805 (HMM E-Value=7.7)
          Length = 347

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 2   PTQAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           PT+ QW+KV+YI  G+YV  A  +   G+ + Q W
Sbjct: 175 PTRDQWQKVYYIGAGIYVFGAVAFAALGTSKEQPW 209


>SB_12292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 34.3 bits (75), Expect = 0.055
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 8   QAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           Q +WR VF+I   VYVV    Y+   SG RQ W
Sbjct: 28  QEEWRIVFWITMIVYVVAVIGYSALCSGYRQPW 60


>SB_7041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 34.3 bits (75), Expect = 0.055
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 32  YIAGGVYVVCATFYNIFGSGRRQDW 106
           YI G +Y   A FY +F SG +Q W
Sbjct: 10  YIGGAIYAAGAVFYAVFASGEKQTW 34


>SB_42521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 2   PTQAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           P +A W+ VF+I+ G+YV+ A  +     G  + W
Sbjct: 1   PDRAHWQIVFFISAGLYVIGAISFVTLSKGSERRW 35


>SB_40992| Best HMM Match : DUF1531 (HMM E-Value=5.7)
          Length = 104

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 5   TQAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           T  +WR VF+I   VY+V    + +  SG +Q W
Sbjct: 1   TAKEWRVVFWITFIVYIVGIVLFGLLVSGDKQKW 34


>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
          Length = 676

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 14  QWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           +WR VF+I   VY+V A  +  F SG  Q W
Sbjct: 607 EWRTVFWITFFVYLVGAIVFCTFMSGDLQPW 637


>SB_29796| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
          Length = 362

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 438 RSQQATARKYVVKITILLLFDINKNIXLILSKHTSISFYRSKM 310
           R +    R Y++ ITI+ +  I+  + +IL K  SI   RSK+
Sbjct: 119 RQRSLNRRHYIIAITIIWVLAISIELPVILYKLNSIQMGRSKL 161


>SB_32244| Best HMM Match : DUF1301 (HMM E-Value=5.1)
          Length = 149

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 5   TQAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           T  +WR VF+    VY++ AT + +  S  RQ W
Sbjct: 80  TAEEWRLVFWTTLLVYIIGATVFCLLVSVDRQQW 113


>SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)
          Length = 473

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 5   TQAQWRKVFYIAGGVYVVCATFYNIFGSGRRQDW 106
           T  +WR VF+    VY++ AT + +  S  RQ W
Sbjct: 404 TAEEWRLVFWTTLLVYIIGATVFCLLVSVDRQQW 437


>SB_1374| Best HMM Match : PAN (HMM E-Value=0.013)
          Length = 498

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -2

Query: 179 LSSRSY-RLFCWQPSWHW 129
           +S  SY + FCW+PSW W
Sbjct: 3   VSRNSYLQRFCWRPSWKW 20


>SB_48712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 296 VYKKFKRRFVIALKCIRYRRFVQPF 222
           V +K K RF++A   IRYRR ++ F
Sbjct: 109 VLRKHKCRFILAATTIRYRRSLELF 133


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 195 ITRXQRTEDERLNKTPVXNTL*SNNKTPFEFFIYLHLFSFLSGRKRCS 338
           +T+ +RTE   L++ P  N   S +  PF  F Y    S ++ R   S
Sbjct: 433 LTKKKRTEPSILDRAPRLNRSSSLDSFPFRRFAYGDFSSLMANRNEKS 480


>SB_24983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -2

Query: 125 RRRRGCPSPVSCPNRRCCRTWHRQRKLRPRYRTLSSIALE 6
           R RR  P   SCP RR  RT  R+ +L P  R +S    E
Sbjct: 100 RGRRAVPDAASCP-RRASRT--RRGELSPTRRAVSDALAE 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,838,449
Number of Sequences: 59808
Number of extensions: 222101
Number of successful extensions: 577
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)