Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1055.Seq
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.3  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   5.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   5.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.3  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 483 KENIDGARKRSNAGRRSQQATARKYVVKITILLLF 379
           K N+D  R  SNA   SQ A  R     ITI  L+
Sbjct: 251 KMNVDSLR--SNANTSSQSAEIRIAKAAITICFLY 283


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 107 PSPVSCPNRRCCRTWHRQRKL 45
           P P  CP RR  +T+ R + L
Sbjct: 1   PGPNGCPRRRGRQTYTRFQTL 21


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = -2

Query: 71  RTWHRQRKLRPRYRTLSSIALEW 3
           R   ++  +RP  + + ++A EW
Sbjct: 333 RIQRQENNIRPMVKQIDTVAAEW 355


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 424 HC*EIRGKNY 395
           HC E+ GKNY
Sbjct: 48  HCQEVGGKNY 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,375
Number of Sequences: 438
Number of extensions: 2283
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)