Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1054.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   1.1  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   3.4  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   3.4  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   3.4  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   5.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   5.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    20   7.8  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 104 WFCMGLYSSAILAVSVY 154
           WF   L++S ILA++ Y
Sbjct: 195 WFIAALFTSPILAITQY 211


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 201 WPMYRRNPLNWQVPKNGDTNQQPRKERSE 287
           W   RR  L  ++    + N+Q R+ER E
Sbjct: 53  WFQNRRMKLKKELRAVKEINEQARREREE 81


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 201 WPMYRRNPLNWQVPKNGDTNQQPRKERSE 287
           W   RR  L  ++    + N+Q R+ER E
Sbjct: 204 WFQNRRMKLKKELRAVKEINEQARREREE 232


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 201 WPMYRRNPLNWQVPKNGDTNQQPRKERSE 287
           W   RR  L  ++    + N+Q R+ER E
Sbjct: 263 WFQNRRMKLKKELRAVKEINEQARREREE 291


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 86  YIVQYXWFCMGLYSSAIL 139
           Y++   WF   LYS  IL
Sbjct: 141 YLILAAWFFSALYSLPIL 158


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 203 PWRNSKNGSKQKSST 159
           PW+ S  G+   SST
Sbjct: 66  PWKKSPQGAPSPSST 80


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 201 WPMYRRNPLNWQ 236
           +P YR+N   WQ
Sbjct: 174 FPFYRQNQQRWQ 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,142
Number of Sequences: 336
Number of extensions: 1645
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)