Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1054.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0157 - 14547645-14547935                                         48   2e-06
07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331     28   2.4  
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    28   2.4  
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575...    27   7.2  
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389...    27   7.2  

>12_02_0157 - 14547645-14547935
          Length = 96

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = +3

Query: 36  IDYVGQAKAEKLYRAIITLFSIXGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPWPMYR 215
           +D+ GQ  AE L + ++   ++  FV GY +  F   +             TVP WP + 
Sbjct: 1   MDWQGQKLAEMLMQLLLVASAVAAFVVGYAMADFQLMLLVYAGGVVLTALVTVPNWPFFN 60

Query: 216 RNPLNWQVPKNGDTNQQPR 272
           R+PL W      D + +P+
Sbjct: 61  RHPLKWLDAAEADRHPRPQ 79


>07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331
          Length = 384

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 317 VVQTNFEIMNFTSFLSWLLVCITVLRNLPVQRI 219
           VV   FE++NFT+ +S + V   V++NL + R+
Sbjct: 316 VVFKGFEVVNFTTPVSSVKVLSLVMKNLSLDRV 348


>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
            26892215-26892266,26893530-26893795,26894007-26894229,
            26895154-26895327,26895408-26895485,26895566-26895817,
            26896138-26898204,26899477-26901322,26901474-26901574,
            26902179-26902535,26902681-26902799,26903558-26903559,
            26903630-26903662,26903709-26903841,26904285-26904537,
            26905688-26905912,26906401-26906466,26907373-26907471,
            26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 213  RRNPLNWQVPKNGDTNQQPRKERS 284
            RR  L+ +V  +G TNQ P+KERS
Sbjct: 1234 RRVNLSTRVKDSGPTNQPPKKERS 1257


>12_01_0673 -
           5745956-5750346,5750788-5750872,5751018-5751082,
           5751816-5751993
          Length = 1572

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 236 LPVQRIASVHWP--WRNSKNGSKQKSSTKNIH*LREL 132
           LP+ R+ S+     +   ++G  + SS KN+H LREL
Sbjct: 845 LPISRLESIRRLSIYHVKESGGNKVSSIKNLHCLREL 881


>07_01_0524 +
           3892340-3894625,3894995-3895109,3895204-3895298,
           3895929-3896167,3896524-3896610,3896967-3897066,
           3897908-3898115,3898224-3899422
          Length = 1442

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 110 CMGLYSSAILAVSVYSWCW-ISACCHSYCSSMANVPTQSSEL 232
           C   +  A L + + S  W  S+C   +C S   + T S+EL
Sbjct: 750 CPSTFHLACLGIKMPSGDWHCSSCICRFCGSTQEITTSSAEL 791


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,949,356
Number of Sequences: 37544
Number of extensions: 154796
Number of successful extensions: 417
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)