Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1054.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           27   4.3  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   4.3  
SB_49239| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)                27   7.4  
SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)                 26   9.8  
SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)              26   9.8  

>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 205 GHGGTVRMAASRNPA-PRIYTDCENC*TI*PHTKP 104
           G+GG +  A + N + PR  + CEN   I  HTKP
Sbjct: 409 GYGGPLTCANNENTSIPRCSSRCENVVHIIDHTKP 443


>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 98  YXWFCMGLYSSAILAVSVYSWCWISACCHSYCSSMANVP 214
           + WFC G  S  +L+  V +  ++++ CH + S +   P
Sbjct: 731 HQWFCHGWLSPVVLSRVVVTSGFVTSGCHEWLSLVVLSP 769


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 266  LLVCITVLRNLPVQRIASVHWP 201
            L++   ++RN+PVQ  AS+ WP
Sbjct: 1243 LIISTDLVRNIPVQMHASLTWP 1264


>SB_49239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 272 SWLLVCITVLRNLPVQRIASVHWP--WRNSKNGSKQKSST 159
           SW+ +    LR LP+ R   +H+   W+  K+ +K   +T
Sbjct: 30  SWIYLLTRYLRRLPLNRYGWIHFAGHWQQDKDEAKPTITT 69


>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
          Length = 660

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = +3

Query: 210 YRRNPLNWQVPK------NGDTNQQPRKERSEIHYLKICLYNFYFSNI 335
           Y++NP+N+Q+P         D N+ P      I    + LY+  F N+
Sbjct: 216 YKKNPINFQMPHLNSIEVKVDGNKTPISNLKNIDGQDVDLYHMLFDNV 263


>SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 104 WFCMGLYSSAILAVS--VYSWCWISAC 178
           WFCMG Y + + AV+  V S+C    C
Sbjct: 109 WFCMGYYVNGLKAVAKRVCSYCRKYGC 135


>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
          Length = 1033

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 220 LRRYIGHGGTVRMAASRNPAPRI 152
           +RR+    G +R AASRNP P I
Sbjct: 424 IRRWTHDYGWLRPAASRNPVPSI 446


>SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)
          Length = 547

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 210 YRRNPLNWQVPKNGDTNQQPRKERSEIHY 296
           +RRN  +W+  K G  N      R ++HY
Sbjct: 184 FRRNGDSWEADKKGPCNGYMNHHRLKMHY 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,571,054
Number of Sequences: 59808
Number of extensions: 189663
Number of successful extensions: 524
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)