BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV1054.Seq (399 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12) 27 4.3 SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3 SB_49239| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6 SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3) 27 7.4 SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4 SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065) 26 9.8 SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05) 26 9.8 >SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 468 Score = 28.7 bits (61), Expect = 1.8 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -3 Query: 205 GHGGTVRMAASRNPA-PRIYTDCENC*TI*PHTKP 104 G+GG + A + N + PR + CEN I HTKP Sbjct: 409 GYGGPLTCANNENTSIPRCSSRCENVVHIIDHTKP 443 >SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12) Length = 906 Score = 27.5 bits (58), Expect = 4.3 Identities = 11/39 (28%), Positives = 21/39 (53%) Frame = +2 Query: 98 YXWFCMGLYSSAILAVSVYSWCWISACCHSYCSSMANVP 214 + WFC G S +L+ V + ++++ CH + S + P Sbjct: 731 HQWFCHGWLSPVVLSRVVVTSGFVTSGCHEWLSLVVLSP 769 >SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2323 Score = 27.5 bits (58), Expect = 4.3 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -2 Query: 266 LLVCITVLRNLPVQRIASVHWP 201 L++ ++RN+PVQ AS+ WP Sbjct: 1243 LIISTDLVRNIPVQMHASLTWP 1264 >SB_49239| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 74 Score = 27.1 bits (57), Expect = 5.6 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = -2 Query: 272 SWLLVCITVLRNLPVQRIASVHWP--WRNSKNGSKQKSST 159 SW+ + LR LP+ R +H+ W+ K+ +K +T Sbjct: 30 SWIYLLTRYLRRLPLNRYGWIHFAGHWQQDKDEAKPTITT 69 >SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3) Length = 660 Score = 26.6 bits (56), Expect = 7.4 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Frame = +3 Query: 210 YRRNPLNWQVPK------NGDTNQQPRKERSEIHYLKICLYNFYFSNI 335 Y++NP+N+Q+P D N+ P I + LY+ F N+ Sbjct: 216 YKKNPINFQMPHLNSIEVKVDGNKTPISNLKNIDGQDVDLYHMLFDNV 263 >SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 163 Score = 26.6 bits (56), Expect = 7.4 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%) Frame = +2 Query: 104 WFCMGLYSSAILAVS--VYSWCWISAC 178 WFCMG Y + + AV+ V S+C C Sbjct: 109 WFCMGYYVNGLKAVAKRVCSYCRKYGC 135 >SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065) Length = 1033 Score = 26.2 bits (55), Expect = 9.8 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -3 Query: 220 LRRYIGHGGTVRMAASRNPAPRI 152 +RR+ G +R AASRNP P I Sbjct: 424 IRRWTHDYGWLRPAASRNPVPSI 446 >SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05) Length = 547 Score = 26.2 bits (55), Expect = 9.8 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = +3 Query: 210 YRRNPLNWQVPKNGDTNQQPRKERSEIHY 296 +RRN +W+ K G N R ++HY Sbjct: 184 FRRNGDSWEADKKGPCNGYMNHHRLKMHY 212 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,571,054 Number of Sequences: 59808 Number of extensions: 189663 Number of successful extensions: 524 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 501 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 524 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 703143849 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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