Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1054.Seq
         (399 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    27   0.33 
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   2.4  
AY278448-1|AAP37005.1|  147|Anopheles gambiae microsomal glutath...    22   7.2  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    22   9.5  
AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    22   9.5  

>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 26.6 bits (56), Expect = 0.33
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 176 CCHSYCSSMANVPTQSSELA 235
           CCH +C+     PTQS  LA
Sbjct: 201 CCHLFCAGGCTGPTQSDCLA 220


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 225 LNWQVPKNGDTNQQPRKERSEIHYLKICLYN 317
           LNW    N D+  QPR    +  Y K+ LYN
Sbjct: 687 LNWLQKSNIDSRTQPRLMDLDSIYCKL-LYN 716


>AY278448-1|AAP37005.1|  147|Anopheles gambiae microsomal
           glutathione transferase GSTMIC3protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 8   GFLYIYTNP 34
           GFLY++TNP
Sbjct: 84  GFLYMFTNP 92


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +3

Query: 201 WPMYRRNPLNWQVPKNGD 254
           W ++  N  NW   ++GD
Sbjct: 318 WELFNSNDTNWFYSESGD 335


>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 201 WPMYRRNPLNWQVPKNGDTNQQPRKERSEIHYLK 302
           W   RR  L  ++    + N+Q R+ER E   +K
Sbjct: 185 WFQNRRMKLKKELRAVKEINEQARREREEQDKMK 218


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 370,931
Number of Sequences: 2352
Number of extensions: 6423
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31639662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)