Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1054.Seq
         (399 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L38852-1|AAL31361.1|  102|Homo sapiens signal peptidase 12kDa su...    81   1e-15
BC000884-1|AAH00884.1|  104|Homo sapiens signal peptidase comple...    78   9e-15
BC150277-1|AAI50278.1| 1441|Homo sapiens MAGI2 protein protein.        29   5.7  
AF038563-1|AAC05370.1| 1455|Homo sapiens membrane associated gua...    29   5.7  
AC004808-1|AAC23438.1|  434|Homo sapiens unknown protein.              29   5.7  
AB014605-1|BAA31680.2| 1483|Homo sapiens KIAA0705 protein protein.     29   5.7  

>L38852-1|AAL31361.1|  102|Homo sapiens signal peptidase 12kDa
           subunit protein.
          Length = 102

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 33/92 (35%), Positives = 54/92 (58%)
 Frame = +3

Query: 6   MDFFTSIPTHIDYVGQAKAEKLYRAIITLFSIXGFVWGYIVQQFSQSVYXXXXXXXXXXX 185
           ++  +S+PT +DY GQ  AE++++ I    +I GF++GY+ +QF  +VY           
Sbjct: 2   LEHLSSLPTQMDYKGQKLAEQMFQGIYLFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCL 61

Query: 186 XTVPPWPMYRRNPLNWQVPKNGDTNQQPRKER 281
            T+PPWP+YRR+PL W   +   T+ +   ER
Sbjct: 62  LTLPPWPIYRRHPLKWLPVQESSTDDKKPGER 93


>BC000884-1|AAH00884.1|  104|Homo sapiens signal peptidase complex
           subunit 1 homolog (S. cerevisiae) protein.
          Length = 104

 Score = 78.2 bits (184), Expect = 9e-15
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
 Frame = +3

Query: 6   MDFFTSIPTHIDYVGQAKAEKLYRAIITLFSIXGFVWGYIVQQFSQSVY--XXXXXXXXX 179
           ++  +S+PT +DY GQ  AE++++ II   +I GF++GY+ +QF  +VY           
Sbjct: 2   LEHLSSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCL 61

Query: 180 XXXTVPPWPMYRRNPLNWQVPKNGDTNQQPRKER 281
              T+PPWP+YRR+PL W   +   T+ +   ER
Sbjct: 62  AQLTLPPWPIYRRHPLKWLPVQESSTDDKKPGER 95


>BC150277-1|AAI50278.1| 1441|Homo sapiens MAGI2 protein protein.
          Length = 1441

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 195  PPWPMYRRNPLNWQVPKNGDTNQQP 269
            PP+  YR+ PL+++ P  GD  Q P
Sbjct: 1072 PPFTDYRQPPLDYRQPPGGDYQQPP 1096


>AF038563-1|AAC05370.1| 1455|Homo sapiens membrane associated
            guanylate kinase 2 protein.
          Length = 1455

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 195  PPWPMYRRNPLNWQVPKNGDTNQQP 269
            PP+  YR+ PL+++ P  GD  Q P
Sbjct: 1086 PPFTDYRQPPLDYRQPPGGDYQQPP 1110


>AC004808-1|AAC23438.1|  434|Homo sapiens unknown protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 195 PPWPMYRRNPLNWQVPKNGDTNQQP 269
           PP+  YR+ PL+++ P  GD  Q P
Sbjct: 285 PPFTDYRQPPLDYRQPPGGDYQQPP 309


>AB014605-1|BAA31680.2| 1483|Homo sapiens KIAA0705 protein protein.
          Length = 1483

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 195  PPWPMYRRNPLNWQVPKNGDTNQQP 269
            PP+  YR+ PL+++ P  GD  Q P
Sbjct: 1114 PPFTDYRQPPLDYRQPPGGDYQQPP 1138


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,130,588
Number of Sequences: 237096
Number of extensions: 890639
Number of successful extensions: 1956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1954
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)