Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1054.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043693-5|AAB97532.1|  105|Caenorhabditis elegans Hypothetical ...    65   2e-11
Z81124-14|CAJ85776.1|  360|Caenorhabditis elegans Hypothetical p...    26   8.7  
Z81124-13|CAJ85775.1|  362|Caenorhabditis elegans Hypothetical p...    26   8.7  
U80455-7|AAB37885.1|  135|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    26   8.7  
AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical ...    26   8.7  
AC026301-11|AAK68891.2|  273|Caenorhabditis elegans Hypothetical...    26   8.7  

>AF043693-5|AAB97532.1|  105|Caenorhabditis elegans Hypothetical
           protein C34B2.10 protein.
          Length = 105

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +3

Query: 24  IPTHIDYVGQAKAEKLYRAIITLFSIXGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPW 203
           + +HID+ GQ  AE+ Y+ I+T+  I GF+ G+  QQ S +++             +PPW
Sbjct: 15  LSSHIDFQGQKVAERTYQVILTIAGIIGFLVGFWTQQLSYAMFTVLGASAFTALIILPPW 74

Query: 204 P-MYRRNPLNWQVPKNGDTNQQPRKE 278
           P ++R+NP+ W  P     +   +KE
Sbjct: 75  PFLFRKNPIVWHTPAEPQESGDKKKE 100


>Z81124-14|CAJ85776.1|  360|Caenorhabditis elegans Hypothetical
           protein T21B4.4b protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 393 IDKLDIEFXXAF*NLLTYWIYLRSK 319
           I +L +    +F NLL  W+Y+RSK
Sbjct: 9   IAELLLSIHISFSNLLVLWVYVRSK 33


>Z81124-13|CAJ85775.1|  362|Caenorhabditis elegans Hypothetical
           protein T21B4.4a protein.
          Length = 362

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 393 IDKLDIEFXXAF*NLLTYWIYLRSK 319
           I +L +    +F NLL  W+Y+RSK
Sbjct: 9   IAELLLSIHISFSNLLVLWVYVRSK 33


>U80455-7|AAB37885.1|  135|Caenorhabditis elegans Hypothetical
           protein T01D1.1 protein.
          Length = 135

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 225 LNWQVPKNGDTNQQPRKERSEIHYLKICLYNFYFSN 332
           +N+Q+ K  +   +    +++I+ L + +YNF+F N
Sbjct: 1   MNFQIAKLLEKRNELYSHQAKIYPLIVRIYNFFFEN 36


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 195 PPWPMYRRNPLNWQVPKNGDTNQQPRKERSEIHYLKICLYNF 320
           P  P Y+++P +  V  +GD N  PR         +I L+++
Sbjct: 324 PQQPQYQQHPRSQSVDPSGDMNGGPRPIHQNFSASEIELHHY 365


>AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical
           protein C03H5.5 protein.
          Length = 558

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 281 SFLSWLLVCITVLRNLPVQRIASVHWPWRNSKN 183
           +FLS+   C + +  LP     S+HW  +N K+
Sbjct: 364 TFLSFFAECSSFIPQLPRNNKLSLHWKSQNLKS 396


>AC026301-11|AAK68891.2|  273|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.12 protein.
          Length = 273

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 12  FFTSIPTHIDYVGQAKAEKLYRAIITL 92
           F T  P H+ Y+ Q +  KL+R  +++
Sbjct: 67  FMTGYPIHMSYITQTEIAKLFRKKLSI 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,036,441
Number of Sequences: 27780
Number of extensions: 149663
Number of successful extensions: 461
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)