Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1054.Seq
(399 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 22 2.2
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 22 3.0
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 22 3.0
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 22 3.0
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 21 5.2
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 21 5.2
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 5.2
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 5.2
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 21 5.2
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 20 9.1
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 20 9.1
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 22.2 bits (45), Expect = 2.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 255 TNQQPRKERSEIHYLKICLYNFYFSNISN 341
+ + +ERS+ + L N Y SNISN
Sbjct: 305 SRDKTERERSKERKIISSLSNNYISNISN 333
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.8 bits (44), Expect = 3.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 273 KERSEIHYLKICLYNFYFSNISN 341
+ERS+ + L N Y SNISN
Sbjct: 73 RERSKERKIISSLSNNYISNISN 95
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.8 bits (44), Expect = 3.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 273 KERSEIHYLKICLYNFYFSNISN 341
+ERS+ + L N Y SNISN
Sbjct: 73 RERSKERKIISSLSNNYISNISN 95
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 21.8 bits (44), Expect = 3.0
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +3
Query: 18 TSIPTHIDYVGQA 56
TS+PT+I Y+G+A
Sbjct: 652 TSMPTYICYLGKA 664
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 21.0 bits (42), Expect = 5.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 273 KERSEIHYLKICLYNFYFSNISNKLIS 353
+E I+ + YNF NI N LIS
Sbjct: 16 EEIKTIYSWNVIEYNFPNDNIRNTLIS 42
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 21.0 bits (42), Expect = 5.2
Identities = 8/41 (19%), Positives = 17/41 (41%)
Frame = +3
Query: 30 THIDYVGQAKAEKLYRAIITLFSIXGFVWGYIVQQFSQSVY 152
T DY + +++I + + W Y+ +S+ Y
Sbjct: 110 TRFDYFARTVPPDTFQSIALVDVVKSANWSYVSTVYSEGSY 150
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 5.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 225 LNWQVPKNGDTNQQPRKERSE 287
L W+ GD Q+P KE E
Sbjct: 1633 LRWRSRYLGDRMQRPMKESQE 1653
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.0 bits (42), Expect = 5.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 225 LNWQVPKNGDTNQQPRKERSE 287
L W+ GD Q+P KE E
Sbjct: 1629 LRWRSRYLGDRMQRPMKESQE 1649
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 21.0 bits (42), Expect = 5.2
Identities = 8/41 (19%), Positives = 17/41 (41%)
Frame = +3
Query: 30 THIDYVGQAKAEKLYRAIITLFSIXGFVWGYIVQQFSQSVY 152
T DY + +++I + + W Y+ +S+ Y
Sbjct: 200 TRFDYFARTVPPDTFQSIALVDVVKSANWSYVSTVYSEGSY 240
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 20.2 bits (40), Expect = 9.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 262 WFVSPFLGTCQFRGLRRYIGHGGTVRMAASRNPAPRIYTDCE 137
WF + + +FR L R + T+RM + A I D E
Sbjct: 604 WFTTSGTISEKFRKLIRIEDNVATLRMKLNPTKAASINADFE 645
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 20.2 bits (40), Expect = 9.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -2
Query: 122 ITPYKTXYTEQCN 84
+TPY YT+ C+
Sbjct: 443 VTPYNKNYTKFCS 455
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,655
Number of Sequences: 438
Number of extensions: 2013
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9885360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -