Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1053.Seq
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   2.4  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    24   4.2  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    23   9.6  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    23   9.6  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    23   9.6  

>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 90  CKCYHFFMQRRVVFGTALMYT 152
           C C +F    RV+FGT  +Y+
Sbjct: 57  CYCANFIALFRVIFGTIFVYS 77


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 158 SPCIHKCSAENDAALHEKMITLAFIQCRSR 69
           SPCI      ++  LH  MI   FI CR +
Sbjct: 199 SPCITNSRYMDEKTLHSIMIQFGFI-CRQK 227


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 152 CIHKCSAENDAALHEKMITLAFIQCRSR 69
           C HKC+   DA   EK ++  F+  R R
Sbjct: 559 CRHKCAPNLDAEAAEK-LSSQFVAIRKR 585


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 98  LSFFHATPRRFRHCTYVYT 154
           ++FFH TP RF     V++
Sbjct: 171 INFFHGTPYRFNRSLRVHS 189


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 167 DFQSPCIHKCSAENDAALHEKMITLA 90
           DF+    H C  E D + H ++  LA
Sbjct: 100 DFEGLNSHLCEREGDRSTHNRIFYLA 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 956,241
Number of Sequences: 5004
Number of extensions: 14758
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)