Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1053.Seq
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799     27   2.1  
08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917     27   2.1  
08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783     27   3.6  

>08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799
          Length = 188

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 194 IFIXTSVINDFQSPCIHKCSAENDAALH 111
           + +  +++ D   PC  KCS EN+ +LH
Sbjct: 18  VLVKANILGDIY-PCPCKCSQENETSLH 44


>08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917
          Length = 188

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 194 IFIXTSVINDFQSPCIHKCSAENDAALH 111
           + +  +++ D   PC  KCS EN+ +LH
Sbjct: 18  VLVKANILGDIY-PCPCKCSQENETSLH 44


>08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783
          Length = 188

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 194 IFIXTSVINDFQSPCIHKCSAENDAALH 111
           + +  ++  D   PC  KCS EN+ +LH
Sbjct: 18  VLVKANIFGDIY-PCPCKCSQENETSLH 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,610,393
Number of Sequences: 37544
Number of extensions: 79494
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)