Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1053.Seq
         (299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016415-5|AAW88414.1|  305|Caenorhabditis elegans Serpentine re...    26   5.8  
U41107-5|AAN39671.1|  543|Caenorhabditis elegans Hypothetical pr...    25   7.6  
U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical pr...    25   7.6  
U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical pr...    25   7.6  
AL110477-15|CAB54331.2|  295|Caenorhabditis elegans Hypothetical...    25   7.6  

>AF016415-5|AAW88414.1|  305|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 30 protein.
          Length = 305

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 72  GTTLNKCKCYHFFMQRRVVFGTALMYTRXLKI 167
           G  +NKC   +F +QR +VF   +  +  L I
Sbjct: 171 GCAINKCFYNYFMLQRSIVFSINVFVSIVLSI 202


>U41107-5|AAN39671.1|  543|Caenorhabditis elegans Hypothetical
           protein F55C12.5c protein.
          Length = 543

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 81  LNKCKCYHFFMQRRVVFGTALMYT 152
           ++KC+   FF  R VVFG+ +  T
Sbjct: 212 IHKCRVLPFFRARLVVFGSLIALT 235


>U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical
           protein F55C12.5a protein.
          Length = 876

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 81  LNKCKCYHFFMQRRVVFGTALMYT 152
           ++KC+   FF  R VVFG+ +  T
Sbjct: 163 IHKCRVLPFFRARLVVFGSLIALT 186


>U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical
           protein F55C12.5b protein.
          Length = 925

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 81  LNKCKCYHFFMQRRVVFGTALMYT 152
           ++KC+   FF  R VVFG+ +  T
Sbjct: 212 IHKCRVLPFFRARLVVFGSLIALT 235


>AL110477-15|CAB54331.2|  295|Caenorhabditis elegans Hypothetical
           protein Y113G7B.9 protein.
          Length = 295

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +3

Query: 66  ITGTTLNKCKCYHFFMQRRVVFGTALMYTRXLKI 167
           + G   N+C  +++ +QR ++F   ++++  L I
Sbjct: 160 VFGCATNQCFFHYWLIQRSIIFSLIVLFSLILSI 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,382,490
Number of Sequences: 27780
Number of extensions: 85425
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)