Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1051.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5L0 Cluster: Signal sequence receptor; n=2; Endopter...    63   5e-09
UniRef50_Q4T9K6 Cluster: Chromosome undetermined SCAF7543, whole...    34   2.5  
UniRef50_Q4T5B3 Cluster: Chromosome undetermined SCAF9335, whole...    34   2.5  
UniRef50_A6VNZ3 Cluster: Putative uncharacterized protein; n=2; ...    34   2.5  
UniRef50_Q54VH4 Cluster: Putative uncharacterized protein; n=1; ...    33   4.4  
UniRef50_Q70KX7 Cluster: Tyrosinase-like protein; n=1; Suberites...    33   5.8  

>UniRef50_Q2F5L0 Cluster: Signal sequence receptor; n=2;
           Endopterygota|Rep: Signal sequence receptor - Bombyx
           mori (Silk moth)
          Length = 279

 Score = 62.9 bits (146), Expect = 5e-09
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = -2

Query: 508 EIVNQLKKSPKTPKQSPRARKAKRSAGDD 422
           EIVNQLKKSPKTPKQSPRARKAKRSAGDD
Sbjct: 251 EIVNQLKKSPKTPKQSPRARKAKRSAGDD 279



 Score = 32.7 bits (71), Expect = 5.8
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 543 TASEVDXDWLPKKL*INSKNLPRR-RSSRRAQGKQR 439
           TASEVD DWLPK++    K  P+  + S RA+  +R
Sbjct: 239 TASEVDYDWLPKEIVNQLKKSPKTPKQSPRARKAKR 274


>UniRef50_Q4T9K6 Cluster: Chromosome undetermined SCAF7543, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF7543,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 316

 Score = 33.9 bits (74), Expect = 2.5
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -2

Query: 508 EIVNQLKKSPKTPKQSPRARKAKRSAGDD 422
           E +NQ+ K+  +PK+SPR R  KRSAG D
Sbjct: 289 ETLNQINKA--SPKRSPRKRSQKRSAGSD 315


>UniRef50_Q4T5B3 Cluster: Chromosome undetermined SCAF9335, whole
           genome shotgun sequence; n=8; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF9335,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 219

 Score = 33.9 bits (74), Expect = 2.5
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -2

Query: 508 EIVNQLKKSPKTPKQSPRARKAKRSAGDD 422
           E +NQ+ K+  +PK+SPR R  KRSAG D
Sbjct: 192 ETLNQINKA--SPKRSPRKRSQKRSAGSD 218


>UniRef50_A6VNZ3 Cluster: Putative uncharacterized protein; n=2;
           Pasteurellaceae|Rep: Putative uncharacterized protein -
           Actinobacillus succinogenes 130Z
          Length = 274

 Score = 33.9 bits (74), Expect = 2.5
 Identities = 17/40 (42%), Positives = 27/40 (67%)
 Frame = +1

Query: 178 TFFGIKCHECDKKITNAKKLILYSQRSEIIQKSNIKLFIL 297
           TFFGI+    +++ TN K+  LYS+  EI+++ NIK  +L
Sbjct: 170 TFFGIQPKWLEERSTNTKQNALYSK--EILERENIKRIVL 207


>UniRef50_Q54VH4 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 433

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +3

Query: 96  NTTPLTIT-QSVVKKSMADISIGVQLSKYFFRNKMSRM 206
           +TT +TIT Q  +K + + I   +++SKY F+NK++R+
Sbjct: 334 STTDITITLQCDIKMNPSTIKYTIEISKYNFKNKLNRL 371


>UniRef50_Q70KX7 Cluster: Tyrosinase-like protein; n=1; Suberites
           domuncula|Rep: Tyrosinase-like protein - Suberites
           domuncula (Sponge)
          Length = 591

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 139 PWLTYQ*ACNCQNTFFGIKCHECD 210
           P + ++  CNC N F G  C ECD
Sbjct: 91  PTVVFENVCNCSNNFGGYDCGECD 114


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,718,962
Number of Sequences: 1657284
Number of extensions: 8325305
Number of successful extensions: 24330
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24314
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)