Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1051.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    26   3.2  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   3.2  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   5.6  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.6  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   7.3  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   7.3  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   9.7  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   9.7  

>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 19/77 (24%), Positives = 38/77 (49%)
 Frame = +1

Query: 166 NCQNTFFGIKCHECDKKITNAKKLILYSQRSEIIQKSNIKLFILKNLMR*A*LQAYFYFS 345
           NC NT+  +     ++ +   ++L L+++RS+I   S I    +  L++ A  Q Y    
Sbjct: 20  NCSNTWTFVPYANSNRGLNINQQLKLFNRRSKIALSSFIIPTSVDILVKVAGFQRYIVNV 79

Query: 346 HFAHTRMNNRFVLDVSL 396
            F++ +   R+   +SL
Sbjct: 80  EFSNVQSYFRYYNYISL 96


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 489 KNLPRRRSSRRAQGKQRDQQATTKKS 412
           KNLPR + S   Q KQ  Q  +++KS
Sbjct: 95  KNLPRNQKSNEIQEKQTFQTPSSEKS 120


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 108 LTITQSVVKKSMADISIGVQLSKYFFRNKMSRM*QKNNKCKET 236
           LTI    V  +   +++G+ L K +F NK   M   NNK + T
Sbjct: 83  LTILLFGVLSTPITVNLGLTLFKLYFYNKRYDMVITNNKLRMT 125


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 240 N*FLCICYFFVTFVTFYSEKSILTVARLLICQ 145
           N FL ICY F+   T  S+ S+    R L  Q
Sbjct: 30  NLFLAICYLFLNVRTVSSDSSVSLYDRQLFDQ 61


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 278 FDFCIISDLWLYKISFFA-FVIFLSHS*HF 192
           FDF  ISD+ L  I+ ++ F+I LS + H+
Sbjct: 375 FDFTRISDVALLIIALYSIFIILLSSNSHY 404


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 208 HIRDILFRKKYFDSCTPIDMSAMD 137
           H RD + RKK++  C P   ++ D
Sbjct: 531 HARDAIHRKKFWFRCNPFPDASTD 554


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -1

Query: 110 KWCCVV*ANLWNNFESCAYNNVCDCEH 30
           +W C+  + LW N+    ++   D  H
Sbjct: 639 QWACLCISQLWENYSEAKWSGTRDNAH 665


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 522 DWLPKKL*INSKNLPRRRSSRRAQGKQRDQQA 427
           +WLPKKL +   N   +  S++     +DQQ+
Sbjct: 734 NWLPKKLHLRRVNDTMQCVSQKISNLDKDQQS 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,424
Number of Sequences: 5004
Number of extensions: 38118
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)