Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1051.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0137 + 27955876-27956000,27957626-27957714,27957963-279580...    30   1.1  
03_03_0214 + 15487367-15487388,15488220-15488375,15488690-154889...    29   3.2  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   4.3  
06_03_0089 - 16475677-16476309                                         27   7.5  
04_03_0400 - 15430809-15430832,15431199-15431231,15431355-154314...    27   9.9  

>05_07_0137 +
           27955876-27956000,27957626-27957714,27957963-27958054,
           27959338-27959419,27960038-27960454,27960539-27960876,
           27961066-27961233
          Length = 436

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 202 RDILFRKKYF-DSCTPIDMSAMDFLTTDCVIVSGVVLCE 89
           ++I F K+YF DSC P+D S +  LT     ++ VV+ +
Sbjct: 339 KNIFFTKRYFRDSCLPVDGSYLKDLTVIVADLAKVVIID 377


>03_03_0214 +
           15487367-15487388,15488220-15488375,15488690-15488925,
           15489013-15489132,15490466-15490480
          Length = 182

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 510 KKL*INSKNLPRRRSSRRAQGKQRDQQATTKKS 412
           KK    ++NL R RS     G +R +Q+TTKK+
Sbjct: 105 KKKEFRTRNLKRNRSWTDKNGTRRKKQSTTKKT 137


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 477 RRRSSRRAQGKQRDQQATTKKSFEVMIKRDIKHK 376
           RR +SR     QR    T  + +EV ++R+ KH+
Sbjct: 343 RRGASRYTDNNQRSDWRTEDRDYEVDVRREGKHR 376


>06_03_0089 - 16475677-16476309
          Length = 210

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 483 LPRRRSSRRAQGKQRDQQATTKKSFEVMIKRDIKHKPVVHT 361
           LPRRR  RRA    R++ AT   +F     R    +P + T
Sbjct: 54  LPRRRGERRASPTGREEGATAAPAFTTGYARCRPPRPSICT 94


>04_03_0400 -
           15430809-15430832,15431199-15431231,15431355-15431429,
           15431524-15431805
          Length = 137

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 190 IKCHECDKKITNAKKLILYSQRSEIIQKSNIKL 288
           I C +C +K    KKL LY  RS +    N+KL
Sbjct: 107 IPCKQCPRKSDILKKLTLYDPRSSV----NVKL 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,754,203
Number of Sequences: 37544
Number of extensions: 203737
Number of successful extensions: 525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)