Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1051.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24124| Best HMM Match : DUF1213 (HMM E-Value=3.9)                   31   0.62 
SB_36278| Best HMM Match : Homeobox (HMM E-Value=4.8e-30)              30   1.1  
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)                   28   4.4  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         27   7.6  
SB_42584| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_56117| Best HMM Match : PAN (HMM E-Value=0.00046)                   27   7.6  

>SB_24124| Best HMM Match : DUF1213 (HMM E-Value=3.9)
          Length = 283

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 492 SKNLPRRRSSRRAQGKQRDQQATTKKSFEVMIKRDIKHKP 373
           S  + ++++ R+A  KQ+D+QAT+ K+ +    R    KP
Sbjct: 142 SPKISKQQAPRQASNKQQDKQATSPKTSKQQAPRQASRKP 181


>SB_36278| Best HMM Match : Homeobox (HMM E-Value=4.8e-30)
          Length = 166

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -3

Query: 495 NSKNLPRRRSSRRA-QGKQRDQQATTKKSFEVMIKRDIKHKPVVHTSVCEMTEIKIGL 325
           +SK+  +R S+ RA +GK R  +A T  ++E ++  + K K   + SVCE   + + L
Sbjct: 30  SSKSKRKRGSTERAKEGKPR--RARTAFTYEQLVALENKFKSTRYLSVCERLNLALSL 85


>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
          Length = 1199

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 477  RRRSSRRAQGKQRDQQATTKKSFEVMIK--RDIKHKPV 370
            R+R     +G++RD+    +KSFE M +  +D K KP+
Sbjct: 1004 RKREVDTDEGRRRDRAPKPRKSFEDMFRKEKDKKEKPL 1041


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 20  LLNNAHSRTRCYTHSSQN---C-SIS*LTQHNTTYNHTVC 127
           +LN+A   T CY +S+Q+   C  ++  T HN T+ H  C
Sbjct: 504 ILNDATFWTICYCNSNQDPPLCLFVNGSTTHNATHTHICC 543


>SB_42584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 2   NCNVLYLLNNAHSRTRCYTHSSQNCSIS*LTQH 100
           NC+V   LN+    T  Y H+S+ C IS  T+H
Sbjct: 31  NCSVKCYLNDFCQST-IYNHTSKTCHISTSTRH 62


>SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 939

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 2   NCNVLYLLNNAHSRTRCYTHSSQNCSIS*LTQH 100
           NC+V   LN+    T  Y H+S+ C IS  T+H
Sbjct: 27  NCSVKCYLNDFCQST-IYNHTSKTCHISTSTRH 58


>SB_56117| Best HMM Match : PAN (HMM E-Value=0.00046)
          Length = 107

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 2   NCNVLYLLNNAHSRTRCYTHSSQNCSIS*LTQH 100
           NC+V   LN+    T  Y H+S+ C IS  T+H
Sbjct: 27  NCSVKCYLNDFCQSTT-YNHTSKTCHISTSTRH 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,862
Number of Sequences: 59808
Number of extensions: 283999
Number of successful extensions: 965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)