Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1051.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50311-1|AAA92307.1|  492|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    27   6.7  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    27   6.7  
U97189-5|AAC48163.1|  206|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U50311-1|AAA92307.1|  492|Caenorhabditis elegans Hypothetical
           protein C25E10.5 protein.
          Length = 492

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 268 VLFLTFGCIKLVSLHLLFFCHIRDILFRKKYFDSCT 161
           +L + FG +  V L L  FC +  IL ++K F  CT
Sbjct: 314 MLMVCFGVLSCVVLLLYIFCRLGQILPQQKVFLVCT 349


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 231 LCICYFFVTFVTFYSEKSILTVARLLICQP 142
           L I YFF    T  SE   L + RLL+  P
Sbjct: 682 LLITYFFAIICTMVSELPALNIERLLLASP 711


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
            protein W03F11.4 protein.
          Length = 1406

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 492  SKNLPRRRSSRRAQGKQRDQQATTKKSFEVMI 397
            S++ PRR   RR   K +D +   KKSF VM+
Sbjct: 1376 SEDRPRRGDKRRGAAK-KDVKEEDKKSFSVMV 1406


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 311 LIKFFKINSLIFDFCIISDLWLYKISFFAFVIF 213
           +I F+ +NSLIF   I   L  +K  F+A+  F
Sbjct: 169 VISFYMVNSLIFYLAITFSLLFFKKIFYAWKRF 201


>U97189-5|AAC48163.1|  206|Caenorhabditis elegans Hypothetical
           protein C48B6.3 protein.
          Length = 206

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 125 RLCDCKWCCVV*ANLWNNFESCA 57
           R CDC         LWN+FE CA
Sbjct: 17  RRCDCTEDLTENDKLWNDFEGCA 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,273,333
Number of Sequences: 27780
Number of extensions: 222910
Number of successful extensions: 955
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)