Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1051.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   3.6  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   3.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   6.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.2  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 102 TPLTITQSVVKKSMADISIGVQLSKYFFRNKMSRM*QKNNKCKE 233
           T + + ++V+KK +A+ S+    + Y   NK+ +   K    KE
Sbjct: 88  TSIYLDENVIKKLVAECSVISDANIYIRFNKLVKCFGKYKTMKE 131


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 102 TPLTITQSVVKKSMADISIGVQLSKYFFRNKMSRM*QKNNKCKE 233
           T + + ++V+KK +A+ S+    + Y   NK+ +   K    KE
Sbjct: 88  TSIYLDENVIKKLVAECSVISDANIYIRFNKLVKCFGKYKTMKE 131


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 56  THSSQNCSIS*LTQHNTTYNHT 121
           +H +QN   S ++ HN  Y +T
Sbjct: 256 SHKTQNLYYSAMSSHNLNYVNT 277


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 83  LWNNFESCAYNNVCDCEHYLIN 18
           LW    +CAY  + + E  + N
Sbjct: 259 LWKLLPTCAYKQLIESEDAIYN 280


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 86  NLWNNFESCAYNNVCDCEHYLINKER 9
           N +NN+ +  YNN     + +IN E+
Sbjct: 336 NNYNNYNNNNYNNYKKLYYNIINIEQ 361


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 79  HKLAHTTQHHLQSHS 123
           H   H T HH  SH+
Sbjct: 423 HSHIHATPHHHHSHA 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,142
Number of Sequences: 438
Number of extensions: 2669
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)