Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1051.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s...    28   4.7  
At5g09995.3 68418.m01156 expressed protein                             27   6.2  
At5g09995.2 68418.m01155 expressed protein                             27   6.2  
At5g09995.1 68418.m01157 expressed protein                             27   6.2  
At1g69150.1 68414.m07911 DC1 domain-containing protein contains ...    27   8.3  

>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
           similarity to fimbrin-like protein AtFim2 [Arabidopsis
           thaliana] GI:2737926; contains Pfam profile PF00307:
           Calponin homology (CH) domain
          Length = 654

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 217 FFCHIRDILFRKKYFDSCTPIDMSAMDFLTTDCVIVSGVVLCEL 86
           +  HI + L   ++ + C PI+ S+ D      V   GV+LC+L
Sbjct: 130 YVAHINNYLSGDEFLNKCLPINPSSNDLFE---VAKDGVLLCKL 170


>At5g09995.3 68418.m01156 expressed protein
          Length = 256

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 271 FVLFLTFGCIKLVSLHLLFFCHIRDILFRKKYFDSCTP-IDMSAMDFLTTDCVI-VSGVV 98
           FVL     C+  +S   LFF  I  +L  KK  +S    +D++  +   T   + +SG+ 
Sbjct: 96  FVLLNVVACVTAISASWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDTMAAVRLSGME 155

Query: 97  LCELT 83
           + +LT
Sbjct: 156 ISDLT 160


>At5g09995.2 68418.m01155 expressed protein
          Length = 257

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 271 FVLFLTFGCIKLVSLHLLFFCHIRDILFRKKYFDSCTP-IDMSAMDFLTTDCVI-VSGVV 98
           FVL     C+  +S   LFF  I  +L  KK  +S    +D++  +   T   + +SG+ 
Sbjct: 96  FVLLNVVACVTAISASWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDTMAAVRLSGME 155

Query: 97  LCELT 83
           + +LT
Sbjct: 156 ISDLT 160


>At5g09995.1 68418.m01157 expressed protein
          Length = 205

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 271 FVLFLTFGCIKLVSLHLLFFCHIRDILFRKKYFDSCTP-IDMSAMDFLTTDCVI-VSGVV 98
           FVL     C+  +S   LFF  I  +L  KK  +S    +D++  +   T   + +SG+ 
Sbjct: 96  FVLLNVVACVTAISASWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDTMAAVRLSGME 155

Query: 97  LCELT 83
           + +LT
Sbjct: 156 ISDLT 160


>At1g69150.1 68414.m07911 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 517

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 100 QHHLQSHSLSLRNPWLTYQ*A-CNCQNTFFGIKCHECDKKI-TNAKK 234
           QHH   H L L      +  A C   +  +  KCHECD K   N +K
Sbjct: 94  QHH--DHKLKLEMVKSCFSCATCGKDSDGYSYKCHECDLKFHVNCEK 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,095,400
Number of Sequences: 28952
Number of extensions: 184086
Number of successful extensions: 543
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)