Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1050.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23DT7 Cluster: Putative uncharacterized protein; n=1; ...    33   2.7  
UniRef50_Q23BR6 Cluster: PX domain containing protein; n=1; Tetr...    33   2.7  

>UniRef50_Q23DT7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1680

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +3

Query: 87  QYWPSQNYFXNKCLNIKKMLYILYSTNYLQAQQNS*CQITLVLQFE 224
           +Y     YF N CLN +     L   NYLQ  QN    I+L  QF+
Sbjct: 850 KYQIFMQYFENDCLNYQNFTLFLIDQNYLQQNQN---PISLQFQFQ 892


>UniRef50_Q23BR6 Cluster: PX domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: PX domain containing
           protein - Tetrahymena thermophila SB210
          Length = 1167

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = -3

Query: 296 FHNVLNGCTKIWHKNLLVSRSCNFLKL*YQSYL 198
           FH+++N  TKIW KNL  + S N L L YQ+ L
Sbjct: 13  FHSIINPLTKIWVKNLEANSSTN-LTLNYQNTL 44


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,235,464
Number of Sequences: 1657284
Number of extensions: 7185123
Number of successful extensions: 12550
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12538
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)