Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1050.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    30   0.22 
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   6.3  

>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 401  TSSLVGQVTFLSPHXRSEGDYGVFRFDSYSFSNDTFHNVLN 279
            +SS+ G V   S   +S+ +Y V  + +   S+DT+ NVLN
Sbjct: 954  SSSIPGPVLLASLKSQSKDEYSVLLYGTEVSSSDTYLNVLN 994


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 224 ENYKNETLTNFCAIFWYSHLKHYE 295
           EN    T+ + C   +Y HLK YE
Sbjct: 375 ENAPQSTIISECLAKYYIHLKEYE 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,669
Number of Sequences: 5004
Number of extensions: 34100
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)