Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1050.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835...    30   1.2  
06_01_1116 + 9197761-9199956                                           29   2.7  
02_04_0175 + 20642877-20643618,20643844-20643955,20644052-206441...    28   3.6  
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536...    28   4.8  
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977...    27   6.3  

>05_07_0236 -
           28582157-28582552,28582639-28582911,28583324-28583560,
           28583653-28583694,28583782-28583964,28584393-28584524,
           28585605-28586057
          Length = 571

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 314 NMSQIGIHHNLLHCGHAXIGMLLGRP 391
           N  Q+ IHH+ L CG+A I  +  +P
Sbjct: 326 NSKQVSIHHSNLACGNALINSIKAKP 351


>06_01_1116 + 9197761-9199956
          Length = 731

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 200 DNFGTTI*ENYKNETLTNF-CAIFWYSHLKHYEMCHW 307
           DNF + +  N K  TLT   C++ W+   KH+++  W
Sbjct: 151 DNFSSRMNANRKLATLTPARCSVKWHGPHKHFDVNPW 187


>02_04_0175 +
           20642877-20643618,20643844-20643955,20644052-20644174,
           20644258-20644509,20644510-20644639,20644719-20644928,
           20645280-20645426
          Length = 571

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 296 FHNVLNGCTKIWHKNLLVSR--SCNFLKL*YQSYLTLTILLCLKVICT 159
           +H VL   T++  KNLL +R  + N  +L      T T L CL+VI T
Sbjct: 193 YHGVLENGTQVAVKNLLNNRYPTTNSSQLRCTEITTATQLDCLRVIAT 240


>03_02_0067 +
           5364713-5364936,5365513-5367016,5367207-5368250,
           5368467-5368577,5368997-5369068,5369719-5369737,
           5369838-5371142,5371317-5371397,5372441-5372604,
           5373363-5373466,5373537-5373628,5374079-5374216,
           5374370-5374426,5374820-5375046
          Length = 1713

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 323 DSYSFSNDTFHNVLNGCTKIWH-KNLLVSRSCNFLK 219
           D  S +    HN  NGCT +W+  N L  +  +FL+
Sbjct: 220 DVISLAQKVSHNERNGCTVLWNLGNCLFEQFSSFLR 255


>09_04_0472 -
           17895285-17896459,17897113-17897271,17897374-17897794,
           17898520-17898552,17898902-17899384
          Length = 756

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 332 FRFDSYSFSNDTFHNVLNGCTKIWHKNLLVSRSCNFLKL*YQSYLTLT 189
           F F+   F++ TF++  NG  K+    ++   SC+ +K    SY  ++
Sbjct: 233 FNFNKNYFNSTTFYDTYNGLAKVSLDWIITMDSCDRVKRNTTSYACIS 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,096,844
Number of Sequences: 37544
Number of extensions: 177437
Number of successful extensions: 273
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)