Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1050.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical ...    30   0.81 
U80843-11|AAB37970.1|  296|Caenorhabditis elegans Hypothetical p...    29   2.5  
AL110487-13|CAB54429.2|  268|Caenorhabditis elegans Hypothetical...    27   10.0 
AF456253-1|AAL59611.1|  268|Caenorhabditis elegans secreted 2-im...    27   10.0 
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical
           protein Y106G6H.5 protein.
          Length = 855

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 260 AIFWYSHLKHYEMCHWKMNMSQIGIHHNLLHCGHAXIGMLLG 385
           A   YS+L H   CH   N+    I+H L   G A  G ++G
Sbjct: 424 AALTYSNLYHSHQCHTARNLRMAPIYHQLRDAG-AVFGEIMG 464


>U80843-11|AAB37970.1|  296|Caenorhabditis elegans Hypothetical
           protein C32B5.15 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 236 NETLTNFCAIFWYSHLKHYEMCHWKMNMSQIGIHH--NLLHCGHAXIGMLL 382
           +E L N       +HLK   +  WK  MSQ  IHH  N+ +  H  +  ++
Sbjct: 139 HEMLRNTILNLHQTHLKSNIIFFWKQGMSQQKIHHFSNIRNVNHIILSEMV 189


>AL110487-13|CAB54429.2|  268|Caenorhabditis elegans Hypothetical
           protein Y39E4B.8 protein.
          Length = 268

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 205 LWYYNLRKLQERDTNKFLCHI 267
           +W  NLR+ +++D+  +LC I
Sbjct: 100 IWVLNLRRAEQQDSGCYLCEI 120


>AF456253-1|AAL59611.1|  268|Caenorhabditis elegans secreted
           2-immunoglobulin-domainprotein ZIG-8 protein.
          Length = 268

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 205 LWYYNLRKLQERDTNKFLCHI 267
           +W  NLR+ +++D+  +LC I
Sbjct: 100 IWVLNLRRAEQQDSGCYLCEI 120


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
           protein F59E12.9 protein.
          Length = 1621

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +3

Query: 96  PSQNYFXNKCLNIKKMLYILYS---TNYLQAQQNS*CQITLVL-QFEKITRT 239
           PS ++  NKC+N  KML ++      +YL A     C +  V  + EK+ RT
Sbjct: 320 PSTSHLRNKCVNCDKMLSMVTEETWKHYLGASSYY-CSVKCVAGKVEKVMRT 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,655,389
Number of Sequences: 27780
Number of extensions: 187877
Number of successful extensions: 404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)