Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1049.Seq
         (309 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1121|AAO41424.2|  668|Drosophila melanogaster CG12052-P...    27   3.6  
AB107347-1|BAC67652.1|  668|Drosophila melanogaster Lola protein...    27   3.6  
AB107327-1|BAC67632.1|  668|Drosophila melanogaster Lola protein...    27   3.6  
AB107307-1|BAC67612.1|  668|Drosophila melanogaster Lola protein...    27   3.6  
AB107287-1|BAC67592.1|  668|Drosophila melanogaster Lola protein...    27   3.6  

>AE013599-1121|AAO41424.2|  668|Drosophila melanogaster CG12052-PO,
           isoform O protein.
          Length = 668

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 59  NXANHFYKYFLNNKQCTTXQSXKIIYKK 142
           N ++ FY Y LNN   TT  S  I + K
Sbjct: 479 NASDEFYGYHLNNNNTTTSSSTTISHAK 506


>AB107347-1|BAC67652.1|  668|Drosophila melanogaster Lola protein
           isoform P protein.
          Length = 668

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 59  NXANHFYKYFLNNKQCTTXQSXKIIYKK 142
           N ++ FY Y LNN   TT  S  I + K
Sbjct: 479 NASDEFYGYHLNNNNTTTSSSTTISHAK 506


>AB107327-1|BAC67632.1|  668|Drosophila melanogaster Lola protein
           isoform P protein.
          Length = 668

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 59  NXANHFYKYFLNNKQCTTXQSXKIIYKK 142
           N ++ FY Y LNN   TT  S  I + K
Sbjct: 479 NASDEFYGYHLNNNNTTTSSSTTISHAK 506


>AB107307-1|BAC67612.1|  668|Drosophila melanogaster Lola protein
           isoform P protein.
          Length = 668

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 59  NXANHFYKYFLNNKQCTTXQSXKIIYKK 142
           N ++ FY Y LNN   TT  S  I + K
Sbjct: 479 NASDEFYGYHLNNNNTTTSSSTTISHAK 506


>AB107287-1|BAC67592.1|  668|Drosophila melanogaster Lola protein
           isoform P protein.
          Length = 668

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 59  NXANHFYKYFLNNKQCTTXQSXKIIYKK 142
           N ++ FY Y LNN   TT  S  I + K
Sbjct: 479 NASDEFYGYHLNNNNTTTSSSTTISHAK 506


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,161,447
Number of Sequences: 53049
Number of extensions: 100298
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 589756776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)