Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1046.Seq
         (505 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.1  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   4.7  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    21   8.3  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 404 YSEYXWQAXGSGHXT 360
           Y+ + W A G GH T
Sbjct: 281 YNSFNWTANGHGHNT 295


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +1

Query: 133 RLSLXIITIL*MKKTNEYILILQTCILRKNLFIILLLA 246
           +LS+ II+++ +     Y+LIL   ILR+   I+++L+
Sbjct: 194 KLSINIISLVQLWIFQLYLLILCDQILREFDQIVVILS 231


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 5/22 (22%), Positives = 13/22 (59%)
 Frame = +3

Query: 189 INIANVHIAKKFIHNFITCVTD 254
           IN+  +  +++ + N+  C+ D
Sbjct: 26  INVDEILASERLLKNYFNCIMD 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,617
Number of Sequences: 336
Number of extensions: 772
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)