Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1046.Seq
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26751.1 68418.m03187 shaggy-related protein kinase alpha / A...    28   3.1  
At3g05840.2 68416.m00656 shaggy-related protein kinase gamma / A...    27   7.2  
At3g05840.1 68416.m00655 shaggy-related protein kinase gamma / A...    27   7.2  

>At5g26751.1 68418.m03187 shaggy-related protein kinase alpha /
           ASK-alpha (ASK1) identical to shaggy-related protein
           kinase alpha SP:P43288 GI:460832 from [Arabidopsis
           thaliana]
          Length = 405

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 150 HYNTLNEKNK*IYINIANVHI--AKKFIHNFI-TCVTDL*PKSXVI 278
           HYN LN++   IY+ +    I  A  +IH  I  C  D+ P++ ++
Sbjct: 157 HYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLV 202


>At3g05840.2 68416.m00656 shaggy-related protein kinase gamma /
           ASK-gamma (ASK3) identical to shaggy-related protein
           kinase gamma SP:P43289 GI:456509 from [Arabidopsis
           thaliana]
          Length = 409

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 150 HYNTLNEKNK*IYINIANVHIAK--KFIHNFI-TCVTDL*PKSXVI 278
           HYN LN++   +Y+ +    I +   +IH  I  C  D+ P++ ++
Sbjct: 161 HYNKLNQRMPLVYVKLYTYQIFRSLSYIHRCIGVCHRDIKPQNLLV 206


>At3g05840.1 68416.m00655 shaggy-related protein kinase gamma /
           ASK-gamma (ASK3) identical to shaggy-related protein
           kinase gamma SP:P43289 GI:456509 from [Arabidopsis
           thaliana]
          Length = 409

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 150 HYNTLNEKNK*IYINIANVHIAK--KFIHNFI-TCVTDL*PKSXVI 278
           HYN LN++   +Y+ +    I +   +IH  I  C  D+ P++ ++
Sbjct: 161 HYNKLNQRMPLVYVKLYTYQIFRSLSYIHRCIGVCHRDIKPQNLLV 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,487,826
Number of Sequences: 28952
Number of extensions: 54859
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)