Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1044.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349... 29 2.1
01_06_1777 + 39818212-39819696 29 2.1
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224 29 2.7
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 28 4.8
07_03_0846 - 21983581-21986055 27 6.3
06_01_1170 - 10002650-10004122 27 6.3
02_05_0814 - 31970558-31971126,31971242-31971413 27 6.3
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 8.4
02_02_0156 - 7277793-7277875,7278535-7278638,7278808-7279211,727... 27 8.4
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 8.4
>02_01_0486 -
3495792-3496034,3496862-3496934,3497128-3497422,
3497585-3497759,3498349-3498795,3499994-3500053
Length = 430
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -1
Query: 328 PQFRTXGSCTRPSGRWCEATIRGIILNAS-KAEASLAESGKDMLTVEPRESGGSKQCXFT 152
P G RP+ +++IRGII S KA++SL + + +L + S +Q T
Sbjct: 64 PNSARSGLPPRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQVKAT 123
Query: 151 SRVSHS 134
+ S S
Sbjct: 124 TSRSFS 129
>01_06_1777 + 39818212-39819696
Length = 494
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 183 SRGSTVSISLPDSARLASALEAFRIIPRMVASHHRP-LGRVHEPXVRNCGSSRT 341
+R T SI + + ++A +I+ RMV HHRP G + C + RT
Sbjct: 399 TRKETFSILISGLCSESRFIDAAQIMERMVKGHHRPEAGEFNNVIEGLCSAGRT 452
>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
Length = 787
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 48 GAVMHVLRKKTDSID----LRDPNGLRRRVSRFECETRLVKXH 164
G V+ L + TDS++ L +P+GL RRV F E+++ H
Sbjct: 340 GTVLRYLFQDTDSVNNSGGLLNPSGLLRRVRMFVPESQVTSMH 382
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 232 ASLAESGKDMLTVEPRESGGSKQCXFTSRVSHSKRETRRRSPFGS 98
A+ A +GK + E E S+QC T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 90 DLRDPNGLRRRVSRFECETRLVKXHCLEPPDSRGSTVSISLPDSARLASA 239
DL+D G +R +C+T PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>06_01_1170 - 10002650-10004122
Length = 490
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 183 SRGSTVSISLPDSARLASALEAFRIIPRMVASHHRPL 293
S GS + P +A LA+ALE R+ A H PL
Sbjct: 298 SFGSMAQLQPPHAAALAAALERTRVAFVWAAGSHTPL 334
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 297 GRAAGGAKLPSAGLS*TPLRPKPA*PNP 214
G GG PS+ S TP P P+ P P
Sbjct: 135 GGGGGGGSTPSSPSSPTPTTPNPSTPTP 162
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 181 SGGSKQCXFTSRVSHSKRETRRRSPFGSRRSML 83
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>02_02_0156 -
7277793-7277875,7278535-7278638,7278808-7279211,
7279403-7279543,7279700-7279904,7279984-7280093
Length = 348
Score = 27.1 bits (57), Expect = 8.4
Identities = 22/49 (44%), Positives = 24/49 (48%)
Frame = -2
Query: 354 SNTAQYERXRSFGHXVHALGRAAGGAKLPSAGLS*TPLRPKPA*PNPAR 208
SNTA ER + V L LP AG S + LRPKP P PAR
Sbjct: 279 SNTAAKERLTRAVNRVQKL-------TLPKAGQS-SSLRPKPRDPAPAR 319
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 213 ARICSLWSPESREALNNVXLLVAFRIQNARRDVEA 109
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,903,849
Number of Sequences: 37544
Number of extensions: 221169
Number of successful extensions: 610
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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