Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1044.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    27   5.7  
Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    27   10.0 
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    27   10.0 
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    27   10.0 
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    27   10.0 
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    27   10.0 

>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 298 RPSGRWCEATIRGIILNASKAEAS 227
           RPSG WC     G+ L  ++ EAS
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEAS 58


>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -1

Query: 298 RPSGRWCEATIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCXFTSRVSHS 134
           RPSG WC     G     + AE S    G  +  ++ R      Q    ++++ S
Sbjct: 49  RPSGGWCMRVFEGFNAAKTDAEKSCKSVGSTLSGIQNRNEALYIQTALLAQIARS 103


>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 249 TPLRPKPA*PNPARICSLWSPESREALNN---VXLLVAFRIQNARRDVEAHLD 100
           T L   PA PN AR  S W  E+  + NN     + +  +I  +R++   H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 249 TPLRPKPA*PNPARICSLWSPESREALNN---VXLLVAFRIQNARRDVEAHLD 100
           T L   PA PN AR  S W  E+  + NN     + +  +I  +R++   H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -2

Query: 213  ARICSLWSPESREALNNVXLLVAFRIQNARRDVEAHLDRGDRCYRFFFLTRASR 52
            A++  +W  E   A   +  LV      A+ DVEA L +GDR   F   T ASR
Sbjct: 1288 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDR--PFMIYTDASR 1338


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -2

Query: 213  ARICSLWSPESREALNNVXLLVAFRIQNARRDVEAHLDRGDRCYRFFFLTRASR 52
            A++  +W  E   A   +  LV      A+ DVEA L +GDR   F   T ASR
Sbjct: 1191 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDR--PFMIYTDASR 1241


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -2

Query: 213  ARICSLWSPESREALNNVXLLVAFRIQNARRDVEAHLDRGDRCYRFFFLTRASR 52
            A++  +W  E   A   +  LV      A+ DVEA L +GDR   F   T ASR
Sbjct: 1202 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDR--PFMIYTDASR 1252


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 249 TPLRPKPA*PNPARICSLWSPESREALNN---VXLLVAFRIQNARRDVEAHLD 100
           T L   PA PN AR  S W  E+  + NN     + +  +I  +R++   H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 298 RPSGRWCEATIRGIILNASKAEASLAESGKDMLTVEPRE 182
           RPSG WC     GI     +AE + A  G  +  ++ R+
Sbjct: 93  RPSGGWCMRVFTGIHDAKIEAERACAAKGGTLTGLQNRD 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,565,836
Number of Sequences: 27780
Number of extensions: 167384
Number of successful extensions: 435
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)