Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1044.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 439 SPIKREREXGLDRRETG*XXPTDGXSXR 356
           SP++RE++ G     T     TDG   R
Sbjct: 313 SPLRREKDRGSREYPTSNATDTDGTKER 340


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 102 DRGDRCYRFFFLTRAS 55
           DRG + Y +FF  R S
Sbjct: 469 DRGMKVYYYFFTQRTS 484


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 102 DRGDRCYRFFFLTRAS 55
           DRG + Y +FF  R S
Sbjct: 469 DRGMKVYYYFFTQRTS 484


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,531
Number of Sequences: 438
Number of extensions: 2122
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)