Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1043.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O42651 Cluster: Autophagy-related protein 17; n=1; Schi...    44   0.002
UniRef50_Q6HM87 Cluster: Putative uncharacterized protein; n=3; ...    32   6.2  
UniRef50_Q4Y3H0 Cluster: CIR protein, putative; n=4; Plasmodium ...    32   6.2  

>UniRef50_O42651 Cluster: Autophagy-related protein 17; n=1;
           Schizosaccharomyces pombe|Rep: Autophagy-related protein
           17 - Schizosaccharomyces pombe (Fission yeast)
          Length = 481

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = +3

Query: 12  FIFSIITCVLVLYEFFRKNSNTNSLRITNIFTYMRY*LAATQRFSIDXKQ*CQLLGSAHQ 191
           +I+  I+ ++ LY FF    +T  ++   +   M      TQ+      Q  QL G AH+
Sbjct: 38  YIYKYISILIYLYSFFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHK 97

Query: 192 FNKSQMSALHNQLQNHMXL 248
           FN+   + L N ++ H  L
Sbjct: 98  FNEDAKTDLRNSIKQHQQL 116


>UniRef50_Q6HM87 Cluster: Putative uncharacterized protein; n=3;
          Bacillus cereus group|Rep: Putative uncharacterized
          protein - Bacillus thuringiensis subsp. konkukian
          Length = 397

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 6  IIFIFSIITCVLVLYEFFRKNSNTNSL 86
          I+ I SII  V ++Y FF KN+N NS+
Sbjct: 5  IVLILSIILIVALIYFFFFKNNNVNSI 31


>UniRef50_Q4Y3H0 Cluster: CIR protein, putative; n=4; Plasmodium
           chabaudi|Rep: CIR protein, putative - Plasmodium
           chabaudi
          Length = 354

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 208 ICDLLNWCAEPNS*HYCFXSIENRCVAANQY 116
           ICD +N C+E +S + C  S E RCV+  QY
Sbjct: 141 ICDTINKCSESSSTNECIKSAE-RCVSLYQY 170


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,730,115
Number of Sequences: 1657284
Number of extensions: 5453670
Number of successful extensions: 9307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9304
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)