Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1043.Seq
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 44 1e-05
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 4.8
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 25 4.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 4.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 4.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 4.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 4.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 4.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 4.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 4.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 4.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 4.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 4.8
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 25 6.3
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 8.4
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 44.0 bits (99), Expect = 1e-05
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +3
Query: 12 FIFSIITCVLVLYEFFRKNSNTNSLRITNIFTYMRY*LAATQRFSIDXKQ*CQLLGSAHQ 191
+I+ I+ ++ LY FF +T ++ + M TQ+ Q QL G AH+
Sbjct: 38 YIYKYISILIYLYSFFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHK 97
Query: 192 FNKSQMSALHNQLQNHMXL 248
FN+ + L N ++ H L
Sbjct: 98 FNEDAKTDLRNSIKQHQQL 116
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 59 EKFIQNEHTCNDRKNKNDK 3
++++QN HTC K++N K
Sbjct: 951 QEYVQNCHTCQINKSRNHK 969
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 414 NCSXLHIKRSV*CLLXILNLSXVXIENFHFFLHSGS 307
NC+ +H+KR+ L +N S + E ++ GS
Sbjct: 308 NCTRVHLKRTSPSELDYINASFIKTETSNYIACQGS 343
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 59 EKFIQNEHTCNDRKNKNDK 3
++++QN HTC K++N K
Sbjct: 951 QEYVQNCHTCQINKSRNHK 969
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 59 EKFIQNEHTCNDRKNKNDK 3
++++QN HTC K++N K
Sbjct: 951 QEYVQNCHTCQINKSRNHK 969
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 59 EKFIQNEHTCNDRKNKNDK 3
++++QN HTC K++N K
Sbjct: 951 QEYVQNCHTCQINKSRNHK 969
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 59 EKFIQNEHTCNDRKNKNDK 3
++++QN HTC K++N K
Sbjct: 951 QEYVQNCHTCQINKSRNHK 969
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 59 EKFIQNEHTCNDRKNKNDK 3
++++QN HTC K++N K
Sbjct: 951 QEYVQNCHTCQINKSRNHK 969
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 59 EKFIQNEHTCNDRKNKNDK 3
++++QN HTC K++N K
Sbjct: 951 QEYVQNCHTCQINKSRNHK 969
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 59 EKFIQNEHTCNDRKNKNDK 3
++++QN HTC K++N K
Sbjct: 951 QEYVQNCHTCQINKSRNHK 969
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 59 EKFIQNEHTCNDRKNKNDK 3
++++QN HTC K++N K
Sbjct: 951 QEYVQNCHTCQINKSRNHK 969
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 59 EKFIQNEHTCNDRKNKNDK 3
++++QN HTC K++N K
Sbjct: 951 QEYVQNCHTCQINKSRNHK 969
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 59 EKFIQNEHTCNDRKNKNDK 3
++++QN HTC K++N K
Sbjct: 951 QEYVQNCHTCQINKSRNHK 969
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +1
Query: 157 NNNVNY*VQHTNLTSHKCQRYIISFKIT*XYIXSXMCTEVK 279
NN+ NY V H+C++++ + K Y+ + ++K
Sbjct: 504 NNDENYLVNQREDLIHQCKKFLHTLKTARYYLETVQLHQLK 544
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 254 IAXCVQKSXIHYIIMXNSL--PLCKKKWKFSIXTXLKFKIXNRH 379
I+ + +H +++ + P K+ W+F+ L F + N H
Sbjct: 29 ISALPESENVHCLLLKQLIGSPQLKQTWQFNFCVDLNFLLENMH 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,605,907
Number of Sequences: 5004
Number of extensions: 25180
Number of successful extensions: 51
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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