Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1043.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40
SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7) 31 0.70
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 30 0.92
SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5) 30 1.2
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1) 29 1.6
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0) 29 2.1
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 28 3.7
SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7) 27 6.5
>SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 134 CSCQSISH-VGKNVCDPKRVRV*VFP 60
CSC+ + H V ++C P RV V VFP
Sbjct: 186 CSCRCVPHYVSMSMCSPSRVHVDVFP 211
>SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)
Length = 519
Score = 30.7 bits (66), Expect = 0.70
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 140 SLCSCQSISH-VGKNVCDPKRVRV*VFP 60
S CSC+ +SH V +C P RV V VFP
Sbjct: 280 SSCSCRCVSHHVLMPMCSPLRVHVDVFP 307
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 134 CSCQSISH-VGKNVCDPKRVRV*VFP 60
CSC+ + H V ++C P R +V VFP
Sbjct: 130 CSCRCVPHHVFMSMCPPSRAQVDVFP 155
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 30.3 bits (65), Expect = 0.92
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 134 CSCQSISH-VGKNVCDPKRVRV*VFP 60
CSC+ +SH V ++C P R V VFP
Sbjct: 74 CSCRCVSHHVLMSMCSPSRAHVDVFP 99
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 134 CSCQSISH-VGKNVCDPKRVRV*VFP 60
CSC+ + H V ++C P R V VFP
Sbjct: 46 CSCRCVPHHVLMSMCSPSRAHVDVFP 71
>SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)
Length = 334
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 134 CSCQSISH-VGKNVCDPKRVRV*VFP 60
CSC+ +SH V +C P RV V VFP
Sbjct: 2 CSCRCVSHHVLMPMCSPLRVHVDVFP 27
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 134 CSCQSISH-VGKNVCDPKRVRV*VFP 60
CSC+ + V ++C P RV V VFP
Sbjct: 86 CSCRCVPRRVVMSMCSPSRVHVDVFP 111
>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
Length = 1282
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 134 CSCQSISH-VGKNVCDPKRVRV*VFP 60
CSC+ + H V K++C P R V VFP
Sbjct: 563 CSCRCVHHHVLKSMCFPSRAHVDVFP 588
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 137 LCSCQSISH-VGKNVCDPKRVRV*VFP 60
+CSC+ + H V ++C P R V VFP
Sbjct: 963 VCSCRCVPHHVLMSMCFPSRAHVDVFP 989
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 137 LCSCQSISH-VGKNVCDPKRVRV*VFP 60
+CSC+ + H V ++C P R V VFP
Sbjct: 1047 VCSCRCVPHHVLMSMCFPSRAHVDVFP 1073
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 134 CSCQSISH-VGKNVCDPKRVRV*VFP 60
CSC+ + H V ++C P R V VFP
Sbjct: 759 CSCRCVPHHVLMSMCFPSRAHVDVFP 784
>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 879
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 134 CSCQSISH-VGKNVCDPKRVRV*VFP 60
CSC+ +SH V +C P R V VFP
Sbjct: 102 CSCRCVSHHVLMPMCSPSRAHVDVFP 127
>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
Length = 540
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 134 CSCQSISH-VGKNVCDPKRVRV*VFP 60
CSC+ + H V ++C P R V VFP
Sbjct: 177 CSCRCVPHHVLMSMCSPSRAHVDVFP 202
>SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)
Length = 533
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 134 CSCQSISHVGKNVCDPKRVRV*VFPEK 54
C C S HV ++C P R V VFP K
Sbjct: 230 CRCVS-HHVLMSICSPSRAHVDVFPIK 255
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 134 CSCQSI-SHVGKNVCDPKRVRV*VFP 60
CSC+ + V ++C P RV V VFP
Sbjct: 340 CSCRCVPGRVVMSMCSPSRVHVDVFP 365
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 134 CSCQSISH-VGKNVCDPKRVRV*VFP 60
CSC+ + H V ++C P R V VFP
Sbjct: 396 CSCRCVPHHVLMSMCFPSRAHVDVFP 421
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,541,404
Number of Sequences: 59808
Number of extensions: 175607
Number of successful extensions: 345
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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