Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1043.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    31   0.46 
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    31   0.46 
Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical pr...    28   4.3  

>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
            protein.
          Length = 1908

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +3

Query: 3    FIIFIFSIITCVLVLYEFFRKNSNTNSLRITNIFTYM 113
            FIIF+ ++I C++VLY   R+ SNT+  ++  + T M
Sbjct: 1265 FIIFMIALIICLIVLY---RRKSNTHQRQMKYLKTQM 1298


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A protein.
          Length = 1951

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +3

Query: 3    FIIFIFSIITCVLVLYEFFRKNSNTNSLRITNIFTYM 113
            FIIF+ ++I C++VLY   R+ SNT+  ++  + T M
Sbjct: 1271 FIIFMIALIICLIVLY---RRKSNTHQRQMKYLKTQM 1304


>Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical
           protein F25H9.3 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 166 VNY*VQHTNLTSHKCQRYII 225
           +NY  Q TNL + KC RY++
Sbjct: 13  INYFTQFTNLEAVKCHRYVL 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,950,233
Number of Sequences: 27780
Number of extensions: 147137
Number of successful extensions: 280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)