Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1043.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24790.1 68418.m02927 expressed protein contains Pfam profile...    28   4.0  
At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2...    27   9.3  

>At5g24790.1 68418.m02927 expressed protein contains Pfam profile
           PF04654: Protein of unknown function, DUF599
          Length = 246

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 6   IIFIFSIITCVLVL--YEFFRKNSNTNSLRITNI 101
           I+  FS++  VLVL   +F  +N+N   LRI +I
Sbjct: 201 ILVFFSVLVMVLVLSHLDFVSRNNNKEKLRIVDI 234


>At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2.1)
           (GLR3) plant glutamate receptor family, PMID:11379626
          Length = 909

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +3

Query: 3   FIIFIFSIITCVLVL----YEFFRKNSNTNSLRI 92
           +++F+ + I C + L    Y+F ++N N  +LR+
Sbjct: 833 WVLFLVAAIVCTMALLKFVYQFLKENPNQRNLRV 866


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,021,387
Number of Sequences: 28952
Number of extensions: 122068
Number of successful extensions: 185
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)