Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1039.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4PMZ6 Cluster: Putative secreted protein; n=1; Ixodes ...    58   1e-07
UniRef50_Q6Z8F1 Cluster: Putative uncharacterized protein P0459B...    48   1e-04
UniRef50_Q7RAM2 Cluster: Putative uncharacterized protein PY0647...    40   0.023
UniRef50_UPI0000E7FA5A Cluster: PREDICTED: hypothetical protein;...    40   0.031
UniRef50_Q28GS0 Cluster: Novel protein; n=1; Xenopus tropicalis|...    36   0.51 
UniRef50_Q5ADW3 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  

>UniRef50_Q4PMZ6 Cluster: Putative secreted protein; n=1; Ixodes
           scapularis|Rep: Putative secreted protein - Ixodes
           scapularis (Black-legged tick) (Deer tick)
          Length = 65

 Score = 57.6 bits (133), Expect = 1e-07
 Identities = 25/36 (69%), Positives = 29/36 (80%)
 Frame = +2

Query: 119 PY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAI 226
           P  G+TANGS+ Q WFLRS+  TWITV ILELIHA+
Sbjct: 2   PKQGETANGSLNQLWFLRSFLPTWITVAILELIHAV 37


>UniRef50_Q6Z8F1 Cluster: Putative uncharacterized protein
           P0459B01.16; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0459B01.16 - Oryza sativa subsp. japonica (Rice)
          Length = 172

 Score = 48.0 bits (109), Expect = 1e-04
 Identities = 21/23 (91%), Positives = 21/23 (91%)
 Frame = +3

Query: 45  RAPWLILPVVICLSQRLSHACLS 113
           RA WLILPVVICLSQRLSHAC S
Sbjct: 148 RATWLILPVVICLSQRLSHACAS 170


>UniRef50_Q7RAM2 Cluster: Putative uncharacterized protein PY06477;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY06477 - Plasmodium yoelii
           yoelii
          Length = 58

 Score = 40.3 bits (90), Expect = 0.023
 Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = +3

Query: 6   MRCDVLVFE-LTKKRAPWLILPVVICLSQRLSHA 104
           ++ ++L+F  L      WLILPVVICLSQRLSHA
Sbjct: 6   IKYNILIFHILLILIVTWLILPVVICLSQRLSHA 39


>UniRef50_UPI0000E7FA5A Cluster: PREDICTED: hypothetical protein;
           n=2; Gallus gallus|Rep: PREDICTED: hypothetical protein
           - Gallus gallus
          Length = 508

 Score = 39.9 bits (89), Expect = 0.031
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = +1

Query: 184 YLDNCGNSRANTCNQNSDQ*WDECFIRSKPIDGGP 288
           YLDNCGNSRANTC +      D C  ++K   G P
Sbjct: 468 YLDNCGNSRANTCRRAPTS-GDACIYQTKTNPGSP 501



 Score = 37.1 bits (82), Expect = 0.22
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 53  LVDPASSYMLVSKIK-PCMSQCKPY*GDTANGSIYQFWFLRS 175
           LVDPASS  L  ++   C+S    Y  +TANGS+ Q WFL S
Sbjct: 423 LVDPASSICLSQRLSHACLSTHGRY-SETANGSLNQLWFLWS 463


>UniRef50_Q28GS0 Cluster: Novel protein; n=1; Xenopus
           tropicalis|Rep: Novel protein - Xenopus tropicalis
           (Western clawed frog) (Silurana tropicalis)
          Length = 118

 Score = 35.9 bits (79), Expect = 0.51
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 370 MSALSTFDGSFCDYHG 417
           MSALSTFDG+FC YHG
Sbjct: 1   MSALSTFDGTFCAYHG 16


>UniRef50_Q5ADW3 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 1241

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 14/54 (25%), Positives = 31/54 (57%)
 Frame = -2

Query: 369 LKDASPVLDHAICKSYPDSSKLTTSDARPSVDWF*SNKTLIPSLVRVLIACISS 208
           L+  + +L  A+ KS+PD+ +L + +  P   +  SN  ++  +++  IA ++S
Sbjct: 423 LRAKATILTRALLKSFPDTLELLSKEVLPVFSFADSNDQVVSEVIKSSIAIVNS 476


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,145,761
Number of Sequences: 1657284
Number of extensions: 8024251
Number of successful extensions: 17048
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17046
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)