Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1039.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.0  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   3.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   4.7  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   6.2  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  LPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 183
           +PG     +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  LPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 183
           +PG     +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  LPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 183
           +PG     +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  LPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 183
           +PG     +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  LPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 183
           +PG     +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 375 RHLKDASPVLDHAICKSYPDSSKLTTSDARP 283
           RH+K A PV+  + C     S++L      P
Sbjct: 68  RHIKGAIPVVSLSTCSMLCGSTQLWPQPTGP 98


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 161  WFLRSYSVTWITVVILELIHAIRTLTSDGMSVL 259
            WF  +   T IT     ++H ++  T+  M VL
Sbjct: 1146 WFDENTKDTKITAASETILHGLKKYTNYSMEVL 1178



 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 89  LRQAYNYWQDQPGSSLF 39
           +R A+N    QPG+S+F
Sbjct: 416 IRHAFNEETVQPGNSVF 432


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 60  ILPVVICLSQRLSHACLS 113
           I P VI    R+SH C+S
Sbjct: 71  IRPCVISRQLRVSHGCVS 88


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +2

Query: 14  RRFSFRANEKESSLVDPASSYMLVSKIKPCMSQC 115
           R  S++     ++ V     Y+L+++  PC  +C
Sbjct: 15  RNLSYKVMYNGNNNVTDLVEYVLLNEDNPCARKC 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,472
Number of Sequences: 336
Number of extensions: 1967
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)