Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1039.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.17 
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    29   0.51 
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    29   0.51 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    28   0.68 

>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = +2

Query: 140 NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDGMSVLLDQNQSTEGLASEVVNFDES 319
           N  IY+ +F  ++S++ + + I  L   +RT++SD  SV L   Q  +  +S ++N D S
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSDS-SVSLYDRQLFDQSSSVILNPDTS 72


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 375 CLINFRW*F---LRLPWLSRVXGNQGSIPEREPEKRLP 479
           C+IN  W     LRL +L +   NQ S  E++ EKR+P
Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 488 PXMWXPFLRLPLXNRTLIPRYP*QPW*SQKLPS 390
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 182  VTWITVVILELIHAIRTLTSDGMSVLLDQNQSTEGLASEVVN 307
            + W T V      AI  L   G++ LL +N S E L  +V+N
Sbjct: 1132 LNWFTAVFGSPSKAIVGLARKGLTALLLENSSNEVLLQKVIN 1173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,248
Number of Sequences: 5004
Number of extensions: 34891
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)