Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1039.Seq
(499 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC068439-1|AAH68439.1| 480|Homo sapiens chromosome 19 open read... 30 3.9
BC036706-1|AAH36706.1| 471|Homo sapiens C19orf28 protein protein. 30 3.9
BC109121-1|AAI09122.1| 711|Homo sapiens F-box protein 34 protein. 29 6.8
BC109120-1|AAI09121.1| 711|Homo sapiens F-box protein 34 protein. 29 6.8
BC095482-1|AAH95482.2| 711|Homo sapiens F-box protein 34 protein. 29 6.8
BC030612-1|AAH30612.1| 777|Homo sapiens G elongation factor, mi... 29 9.0
BC015712-1|AAH15712.1| 779|Homo sapiens GFM2 protein protein. 29 9.0
AY453587-1|AAS49035.1| 531|Homo sapiens elongation factor G iso... 29 9.0
AK025314-1|BAB15109.1| 513|Homo sapiens protein ( Homo sapiens ... 29 9.0
AF367997-1|AAK53401.1| 779|Homo sapiens elongation factor G2 pr... 29 9.0
AF111808-1|AAL39010.1| 732|Homo sapiens MSTP027 protein. 29 9.0
>BC068439-1|AAH68439.1| 480|Homo sapiens chromosome 19 open reading
frame 28 protein.
Length = 480
Score = 30.3 bits (65), Expect = 3.9
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 188 WITVVILELIHAIRTLTSDGMSVLLDQNQSTEGLASEVVNFD 313
W T ++L L H++R +S G +LL Q +GL + +V ++
Sbjct: 39 WFTYLLLYL-HSVRAYSSRGAGLLLLLGQVADGLCTPLVGYE 79
>BC036706-1|AAH36706.1| 471|Homo sapiens C19orf28 protein protein.
Length = 471
Score = 30.3 bits (65), Expect = 3.9
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 188 WITVVILELIHAIRTLTSDGMSVLLDQNQSTEGLASEVVNFD 313
W T ++L L H++R +S G +LL Q +GL + +V ++
Sbjct: 39 WFTYLLLYL-HSVRAYSSRGAGLLLLLGQVADGLCTPLVGYE 79
>BC109121-1|AAI09122.1| 711|Homo sapiens F-box protein 34 protein.
Length = 711
Score = 29.5 bits (63), Expect = 6.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 193 NCGNSRANTCNQNSDQ*WDECFIRSKPIDGG 285
+CG SRA+ C+ DQ WD P+ G
Sbjct: 349 DCGPSRADRCSPKEDQAWDGASQDCPPLPAG 379
>BC109120-1|AAI09121.1| 711|Homo sapiens F-box protein 34 protein.
Length = 711
Score = 29.5 bits (63), Expect = 6.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 193 NCGNSRANTCNQNSDQ*WDECFIRSKPIDGG 285
+CG SRA+ C+ DQ WD P+ G
Sbjct: 349 DCGPSRADRCSPKEDQAWDGASQDCPPLPAG 379
>BC095482-1|AAH95482.2| 711|Homo sapiens F-box protein 34 protein.
Length = 711
Score = 29.5 bits (63), Expect = 6.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 193 NCGNSRANTCNQNSDQ*WDECFIRSKPIDGG 285
+CG SRA+ C+ DQ WD P+ G
Sbjct: 349 DCGPSRADRCSPKEDQAWDGASQDCPPLPAG 379
>BC030612-1|AAH30612.1| 777|Homo sapiens G elongation factor,
mitochondrial 2 protein.
Length = 777
Score = 29.1 bits (62), Expect = 9.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 306 ILMNLDNFCRSHGQVPATHLSNVCLINFRW*FLRLPWLSRVXGNQGSIP 452
+L NL F SH +P+ +++N+C R RL + N S+P
Sbjct: 1 MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLP 49
>BC015712-1|AAH15712.1| 779|Homo sapiens GFM2 protein protein.
Length = 779
Score = 29.1 bits (62), Expect = 9.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 306 ILMNLDNFCRSHGQVPATHLSNVCLINFRW*FLRLPWLSRVXGNQGSIP 452
+L NL F SH +P+ +++N+C R RL + N S+P
Sbjct: 1 MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLP 49
>AY453587-1|AAS49035.1| 531|Homo sapiens elongation factor G
isoform protein.
Length = 531
Score = 29.1 bits (62), Expect = 9.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 306 ILMNLDNFCRSHGQVPATHLSNVCLINFRW*FLRLPWLSRVXGNQGSIP 452
+L NL F SH +P+ +++N+C R RL + N S+P
Sbjct: 1 MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLP 49
>AK025314-1|BAB15109.1| 513|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21661 fis, clone COL08837. ).
Length = 513
Score = 29.1 bits (62), Expect = 9.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 306 ILMNLDNFCRSHGQVPATHLSNVCLINFRW*FLRLPWLSRVXGNQGSIP 452
+L NL F SH +P+ +++N+C R RL + N S+P
Sbjct: 1 MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLP 49
>AF367997-1|AAK53401.1| 779|Homo sapiens elongation factor G2
protein.
Length = 779
Score = 29.1 bits (62), Expect = 9.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 306 ILMNLDNFCRSHGQVPATHLSNVCLINFRW*FLRLPWLSRVXGNQGSIP 452
+L NL F SH +P+ +++N+C R RL + N S+P
Sbjct: 1 MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLP 49
>AF111808-1|AAL39010.1| 732|Homo sapiens MSTP027 protein.
Length = 732
Score = 29.1 bits (62), Expect = 9.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 306 ILMNLDNFCRSHGQVPATHLSNVCLINFRW*FLRLPWLSRVXGNQGSIP 452
+L NL F SH +P+ +++N+C R RL + N S+P
Sbjct: 1 MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLP 49
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,566,012
Number of Sequences: 237096
Number of extensions: 1202730
Number of successful extensions: 1999
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1999
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -