Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1039.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U23172-9|AAK67227.1|  362|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical ...    27   7.6  
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 203 ILELIHAIRTLTSDGMSVLLDQNQSTEGLASEVVNFD 313
           +L++I A+ T   D  S L D+NQ+   + SEV++++
Sbjct: 97  LLQVIPALSTPVGDDCSWLSDKNQTYHAILSEVISYN 133


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 173 SYSVTWITVVILELIHAIRTLTSDGMSVLLDQNQSTEGLASEVV 304
           SY+V+WIT       + IR + SDG++V       TE   S+++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLTVEQLPGVITEDETSQLI 97


>U23172-9|AAK67227.1|  362|Caenorhabditis elegans Hypothetical
           protein F25B5.3a protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 209 ELIHAIRTLTSDGMSVLLDQNQSTEGLASEVVN 307
           E I+   TLT   +S  LDQ+Q +   A+E+VN
Sbjct: 12  ETINCTETLTDTPLSATLDQSQFSMFKAAEIVN 44


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 131 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 235
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
           protein F17C11.10 protein.
          Length = 1101

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 367 ERCVAGT*PCDLQKLSRFIKINDFG 293
           ER V+ + P DL    RF+K N FG
Sbjct: 440 ERFVSNSSPMDLDATQRFLKYNRFG 464


>AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical
           protein Y5H2B.1 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 297 KSLILMNLDNFCRSHGQVPATHLSNVCLINFRW*FLRLPWLS 422
           K L + N   +C    +V    ++ +C+I F W F +L +++
Sbjct: 8   KFLTINNFSRYCLKIVKVHIIWITIICIIYFNWRFKKLDFMA 49


>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
           protein D2005.4 protein.
          Length = 1188

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 158 TDILSHSRYRLNTACTETC 102
           T++L H+R+ L  AC E C
Sbjct: 245 TEVLKHARFCLGLACCERC 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,222,270
Number of Sequences: 27780
Number of extensions: 190138
Number of successful extensions: 571
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)