Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1039.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.44 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.1  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    21   7.1  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    21   7.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = +2

Query: 104 MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDGMSVLLDQNQSTE 283
           M  C P   DT    +Y+F   R Y +   T VI  +   + TLT     VL   ++STE
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT-----VLWLDSRSTE 282

Query: 284 GLASEVVN 307
            + +  VN
Sbjct: 283 RMIAASVN 290


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 294 PKSLILMNLDNFCRSHGQVPAT 359
           P+ L  +NL + CR HG  PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450



 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/48 (18%), Positives = 25/48 (52%)
 Frame = +1

Query: 46  ELPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 189
           E+P    +  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 210 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 257


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/48 (18%), Positives = 25/48 (52%)
 Frame = +1

Query: 46  ELPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 189
           E+P    +  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/48 (18%), Positives = 25/48 (52%)
 Frame = +1

Query: 46  ELPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 189
           E+P    +  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 76  YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 189
           Y C  +    +     LRR   +  ++++VP + +SYL
Sbjct: 215 YPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 211 ANTCNQNSDQ*WDECFIRSKPID 279
           AN C +N+    DEC I +K  D
Sbjct: 112 ANECIENAKGETDECNIGNKYTD 134


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 211 ANTCNQNSDQ*WDECFIRSKPID 279
           AN C +N+    DEC I +K  D
Sbjct: 112 ANECIENAKGETDECNIGNKYTD 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,482
Number of Sequences: 438
Number of extensions: 2489
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)