Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1039.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38560.1 68417.m05459 expressed protein                             28   4.0  
At1g14270.1 68414.m01692 CAAX amino terminal protease family pro...    28   4.0  
At5g51670.1 68418.m06406 expressed protein contains Pfam domain ...    27   5.3  
At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase...    27   7.0  

>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 71  SYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 214
           SY + + +   + +     GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 341 SYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At1g14270.1 68414.m01692 CAAX amino terminal protease family
           protein contains Pfam profile PF02517: CAAX amino
           terminal protease family
          Length = 353

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 57  LILPVVICLSQRLSHACLSASRIKAIPRMAQY 152
           ++  ++ CLSQ  S  CLS SR   +P+   Y
Sbjct: 14  MVSQIISCLSQSSSLLCLSDSRRLILPKTCTY 45


>At5g51670.1 68418.m06406 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 474

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 200 VILELIHAIRTLTSDGMSVLLDQNQSTEGLASEVVNFDES 319
           V+ +L+H   +LT   +    D + S EGL +++VN DE+
Sbjct: 47  VMTKLLHLTHSLTDSNLLTPRDHSLSLEGL-TKIVNGDET 85


>At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase C
           (PLC2) identical to phosphoinositide specific
           phospholipase C(AtPLC2) GI:857374 [Arabidopsis thaliana]
          Length = 581

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -2

Query: 423 VTTMVVAETTIES**GRHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDW 271
           V  + ++E  +E    ++ K       H + + YP  +++T+S+  P V W
Sbjct: 342 VRRLSLSEEQLEKAAEKYAKQIVRFTQHNLLRIYPKGTRVTSSNYNPLVGW 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,769,415
Number of Sequences: 28952
Number of extensions: 181985
Number of successful extensions: 392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)