Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1037.Seq
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    85   3e-18
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    24   7.8  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    24   7.8  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 85.0 bits (201), Expect = 3e-18
 Identities = 39/66 (59%), Positives = 51/66 (77%)
 Frame = -2

Query: 249 IQRFLSQPFQVAEVFTGHAGKLVPXEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAK 70
           +QRFLSQPF VAEVFTG  G+LV  ++TI+ F +IL G +D LPE AFYMVG I++ V K
Sbjct: 456 VQRFLSQPFAVAEVFTGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYMVGSIDDAVKK 515

Query: 69  ADTLAK 52
           A+ +A+
Sbjct: 516 AEKIAQ 521



 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = -3

Query: 347 ILQDXKSXQDIIAXLGMDEXSEEDKLTVARA 255
           +LQ+ KS QDIIA LGMDE SE DKLTV RA
Sbjct: 423 MLQEYKSLQDIIAILGMDELSEADKLTVERA 453


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 13  FSHQFT*NDFLSILSKSISFGHNL 84
           FSH+F  + ++S+  + IS  HN+
Sbjct: 532 FSHRFDFSFWISVAKRLISTSHNM 555


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 141 AGDYDHLPEVAFYMVGPIEEVVAKADTLAKNA 46
           AG+Y      AF ++  + +  +K DTL K A
Sbjct: 255 AGEYGRCIGTAFQLMDDVLDYTSKDDTLGKAA 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,156,912
Number of Sequences: 5004
Number of extensions: 17609
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)